Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC42Q96M95 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC42Q96M95 ZNF285B-201ENST00000561698 1767 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC42Q96M95 RNA5SP119-201ENST00000362715 117 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 U3.6-201ENST00000363622 211 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 RN7SKP280-201ENST00000364196 304 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC42Q96M95 AL583834.1-201ENST00000406943 343 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 MTCYBP29-201ENST00000436327 1006 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 ATP5C1P1-201ENST00000441945 895 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC42Q96M95 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 AC022884.3-201ENST00000579571 248 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 AC107294.3-201ENST00000609211 526 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 AL121772.2-201ENST00000614331 297 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 AC138649.5-201ENST00000637456 137 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
CCDC42Q96M95 MTND5P24-201ENST00000438892 1767 ntBASIC3.51□□□□□ -1.85
CCDC42Q96M95 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 RNA5SP229-201ENST00000410809 99 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 PRELID3BP11-201ENST00000414230 479 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 BX842559.1-201ENST00000419615 532 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 NEK4P1-201ENST00000433383 879 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC106707.2-201ENST00000484182 374 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC093278.1-201ENST00000494700 600 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC42Q96M95 AP003117.2-201ENST00000606010 545 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 SNORA51-201ENST00000606420 132 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC116563.2-201ENST00000624751 535 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 AC068724.3-201ENST00000625906 87 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 RNF6P1-201ENST00000444889 1784 ntBASIC3.5□□□□□ -1.85
CCDC42Q96M95 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC42Q96M95 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC42Q96M95 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 RNU6-1251P-201ENST00000364502 107 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 SNORA5A-201ENST00000384111 134 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 RNU6-532P-201ENST00000384318 107 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 SNORA70E-201ENST00000384492 135 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 MIR591-201ENST00000385290 95 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 RN7SKP159-201ENST00000410657 292 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 AL445584.1-201ENST00000431451 330 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 PTGES3P5-201ENST00000455109 434 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 HMGB3P30-201ENST00000457863 606 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 RNA5SP380-201ENST00000517190 98 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 NF1P5-201ENST00000588287 448 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 VN1R85P-201ENST00000601587 426 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 AL365400.2-201ENST00000605604 902 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 AL391834.1-201ENST00000609609 560 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 AC118273.1-201ENST00000525324 3006 ntBASIC3.49□□□□□ -1.85
CCDC42Q96M95 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
CCDC42Q96M95 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC42Q96M95 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms