Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GNRHR2P1-201ENST00000555315 631 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 PSMB7P1-201ENST00000556349 514 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AC141257.3-201ENST00000572906 215 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 MIR3939-201ENST00000582614 106 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 MRPS35P3-201ENST00000603189 709 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AP004247.3-201ENST00000608682 624 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AL118556.2-201ENST00000614375 824 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AC097372.4-201ENST00000625025 466 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AL353746.1-201ENST00000566293 6881 ntBASIC3.8□□□□□ -1.8
ZNF540Q8NDQ6 AP002001.2-201ENST00000529025 1469 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 NCAPGP1-201ENST00000505112 1814 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AF117829.1-206ENST00000621883 3802 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 OR5P1P-201ENST00000299512 925 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 RNA5SP235-201ENST00000365411 114 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 RNU4-65P-201ENST00000410473 140 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 RPL17P36-201ENST00000420302 549 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 RN7SL98P-201ENST00000462271 300 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 RPS29P19-201ENST00000479709 171 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AC079171.1-201ENST00000568788 914 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 MIR4474-201ENST00000579189 78 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 BPTFP1-201ENST00000579209 492 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 MIR5047-201ENST00000579212 100 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AC006254.3-201ENST00000603353 884 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AP005264.7-201ENST00000625003 745 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 AC005183.1-201ENST00000603687 1979 ntBASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.79□□□□□ -1.8
ZNF540Q8NDQ6 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 DEFB109C-201ENST00000382575 264 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 DEFB109B-201ENST00000382656 264 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 RNU6-629P-201ENST00000384061 103 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 RN7SKP263-201ENST00000411194 309 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 PGBD4P8-201ENST00000412993 562 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 RAD23BP2-201ENST00000416003 1207 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL009174.1-201ENST00000426577 416 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC006548.1-201ENST00000427470 102 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC004975.1-201ENST00000428733 208 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 NEK4P1-201ENST00000433383 879 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 B3GNT2P1-201ENST00000434960 952 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 MTCO3P43-201ENST00000440974 771 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 MTND2P30-201ENST00000456663 382 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC053481.1-201ENST00000467217 306 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 HESX1-202ENST00000473921 757 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 RPS27AP1-201ENST00000475545 471 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 OR5H5P-201ENST00000503164 928 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC025674.1-201ENST00000507074 324 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 SNORA31.20-201ENST00000517111 133 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC010476.1-201ENST00000519111 851 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms