Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPS26P47-201ENST00000427219 348 ntBASIC4.55□□□□□ -1.68
MSH6P52701 AC074367.1-201ENST00000438685 1125 ntBASIC4.55□□□□□ -1.68
MSH6P52701 RN7SL432P-201ENST00000484057 298 ntBASIC4.55□□□□□ -1.68
MSH6P52701 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.55□□□□□ -1.68
MSH6P52701 AC005798.1-201ENST00000513715 387 ntBASIC4.55□□□□□ -1.68
MSH6P52701 RFPL4AP3-201ENST00000515267 345 ntBASIC4.55□□□□□ -1.68
MSH6P52701 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.55□□□□□ -1.68
MSH6P52701 AC006518.1-201ENST00000541449 943 ntBASIC4.55□□□□□ -1.68
MSH6P52701 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.55□□□□□ -1.68
MSH6P52701 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.55□□□□□ -1.68
MSH6P52701 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.55□□□□□ -1.68
MSH6P52701 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.55□□□□□ -1.68
MSH6P52701 RPL23AP92-201ENST00000603609 255 ntBASIC4.55□□□□□ -1.68
MSH6P52701 AL359535.1-201ENST00000612100 1087 ntBASIC4.55□□□□□ -1.68
MSH6P52701 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.55□□□□□ -1.68
MSH6P52701 AL158062.1-201ENST00000619632 745 ntBASIC4.55□□□□□ -1.68
MSH6P52701 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.55□□□□□ -1.68
MSH6P52701 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC4.55□□□□□ -1.68
MSH6P52701 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSH6P52701 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSH6P52701 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
MSH6P52701 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.55□□□□□ -1.68
MSH6P52701 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSH6P52701 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSH6P52701 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSH6P52701 AC006504.1-201ENST00000562493 3666 ntBASIC4.55□□□□□ -1.68
MSH6P52701 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSH6P52701 RNU4-82P-201ENST00000362443 140 ntBASIC4.54□□□□□ -1.68
MSH6P52701 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.54□□□□□ -1.68
MSH6P52701 AL035407.1-201ENST00000429211 571 ntBASIC4.54□□□□□ -1.68
MSH6P52701 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH6P52701 SNRPFP2-201ENST00000440710 251 ntBASIC4.54□□□□□ -1.68
MSH6P52701 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH6P52701 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH6P52701 MTCYBP14-201ENST00000457471 715 ntBASIC4.54□□□□□ -1.68
MSH6P52701 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH6P52701 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
MSH6P52701 SNORD116-30-201ENST00000516468 85 ntBASIC4.54□□□□□ -1.68
MSH6P52701 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH6P52701 DUXAP6-201ENST00000553858 601 ntBASIC4.54□□□□□ -1.68
MSH6P52701 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.54□□□□□ -1.68
MSH6P52701 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH6P52701 NF1P10-201ENST00000613227 742 ntBASIC4.54□□□□□ -1.68
MSH6P52701 AC105227.2-201ENST00000615075 605 ntBASIC4.54□□□□□ -1.68
MSH6P52701 IGHVIII-44-202ENST00000636235 289 ntBASIC4.54□□□□□ -1.68
MSH6P52701 CR383658.2-201ENST00000547576 1525 ntBASIC4.54□□□□□ -1.68
MSH6P52701 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
MSH6P52701 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.54□□□□□ -1.68
MSH6P52701 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH6P52701 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
MSH6P52701 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSH6P52701 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH6P52701 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH6P52701 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH6P52701 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.54□□□□□ -1.68
MSH6P52701 RNU6-1331P-201ENST00000363658 106 ntBASIC4.53□□□□□ -1.68
MSH6P52701 SNORA54-201ENST00000384281 123 ntBASIC4.53□□□□□ -1.68
MSH6P52701 Z93242.1-201ENST00000427102 353 ntBASIC4.53□□□□□ -1.68
MSH6P52701 AL139132.1-201ENST00000431587 344 ntBASIC4.53□□□□□ -1.68
MSH6P52701 UBE2V2P1-201ENST00000434717 398 ntBASIC4.53□□□□□ -1.68
MSH6P52701 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH6P52701 MIR2114-201ENST00000516645 80 ntBASIC4.53□□□□□ -1.68
MSH6P52701 NARSP2-201ENST00000518524 679 ntBASIC4.53□□□□□ -1.68
MSH6P52701 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH6P52701 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH6P52701 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.53□□□□□ -1.68
MSH6P52701 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH6P52701 MIR4435-1-201ENST00000582552 80 ntBASIC4.53□□□□□ -1.68
MSH6P52701 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH6P52701 KC877982.1-201ENST00000602313 470 ntBASIC4.53□□□□□ -1.68
MSH6P52701 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.53□□□□□ -1.68
MSH6P52701 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH6P52701 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH6P52701 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH6P52701 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
MSH6P52701 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
MSH6P52701 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH6P52701 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
MSH6P52701 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.53□□□□□ -1.69
MSH6P52701 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC4.53□□□□□ -1.69
MSH6P52701 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.53□□□□□ -1.69
MSH6P52701 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.53□□□□□ -1.69
MSH6P52701 RAB9AP5-201ENST00000437794 597 ntBASIC4.53□□□□□ -1.69
MSH6P52701 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.53□□□□□ -1.69
MSH6P52701 RAB9AP2-201ENST00000443911 597 ntBASIC4.53□□□□□ -1.69
MSH6P52701 SLC31A1P1-201ENST00000451221 567 ntBASIC4.53□□□□□ -1.69
MSH6P52701 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.53□□□□□ -1.69
MSH6P52701 AC105918.1-201ENST00000474399 838 ntBASIC4.53□□□□□ -1.69
MSH6P52701 HMGB3P14-201ENST00000494195 599 ntBASIC4.53□□□□□ -1.69
MSH6P52701 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.53□□□□□ -1.69
MSH6P52701 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.53□□□□□ -1.69
MSH6P52701 AL121576.1-201ENST00000556055 276 ntBASIC4.53□□□□□ -1.69
MSH6P52701 AC005242.1-201ENST00000585658 438 ntBASIC4.53□□□□□ -1.69
MSH6P52701 AC015911.5-201ENST00000587076 451 ntBASIC4.53□□□□□ -1.69
MSH6P52701 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.53□□□□□ -1.69
MSH6P52701 AL356321.1-201ENST00000621360 228 ntBASIC4.53□□□□□ -1.69
MSH6P52701 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC4.53□□□□□ -1.69
MSH6P52701 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.52□□□□□ -1.69
MSH6P52701 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
MSH6P52701 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms