Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.84□□□□□ -1.47
LIG3P49916 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 AC053481.3-201ENST00000577881 843 ntBASIC5.84□□□□□ -1.47
LIG3P49916 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.84□□□□□ -1.47
LIG3P49916 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.84□□□□□ -1.47
LIG3P49916 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.84□□□□□ -1.47
LIG3P49916 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.84□□□□□ -1.47
LIG3P49916 RPL23AP92-201ENST00000603609 255 ntBASIC5.84□□□□□ -1.47
LIG3P49916 Z95327.3-201ENST00000610385 572 ntBASIC5.84□□□□□ -1.47
LIG3P49916 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
LIG3P49916 AC090527.3-201ENST00000619041 548 ntBASIC5.84□□□□□ -1.47
LIG3P49916 YWHAEP7-203ENST00000622054 312 ntBASIC5.84□□□□□ -1.47
LIG3P49916 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.84□□□□□ -1.47
LIG3P49916 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
LIG3P49916 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.84□□□□□ -1.47
LIG3P49916 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
LIG3P49916 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.48
LIG3P49916 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
LIG3P49916 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
LIG3P49916 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 AL118496.1-201ENST00000440201 1812 ntBASIC5.83□□□□□ -1.48
LIG3P49916 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 RNU6-28P-201ENST00000362378 107 ntBASIC5.83□□□□□ -1.48
LIG3P49916 Y_RNA.72-201ENST00000362894 103 ntBASIC5.83□□□□□ -1.48
LIG3P49916 Y_RNA.356-201ENST00000365475 113 ntBASIC5.83□□□□□ -1.48
LIG3P49916 SNORA17A-201ENST00000391185 133 ntBASIC5.83□□□□□ -1.48
LIG3P49916 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.83□□□□□ -1.48
LIG3P49916 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 SLC35E1P1-201ENST00000419313 864 ntBASIC5.83□□□□□ -1.48
LIG3P49916 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 AC019097.1-201ENST00000424783 735 ntBASIC5.83□□□□□ -1.48
LIG3P49916 COX6CP15-201ENST00000426313 211 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AL035410.1-201ENST00000427409 427 ntBASIC5.83□□□□□ -1.48
LIG3P49916 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 GTF2IP20-201ENST00000431663 360 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 AL161636.2-201ENST00000445179 927 ntBASIC5.83□□□□□ -1.48
LIG3P49916 HMGN1P36-201ENST00000446623 298 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 RPS4XP18-201ENST00000495480 763 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.83□□□□□ -1.48
LIG3P49916 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.83□□□□□ -1.48
LIG3P49916 NDUFA5P12-201ENST00000503796 343 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AC010587.1-201ENST00000505809 469 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 IGLV3-24-201ENST00000517477 197 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
LIG3P49916 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.83□□□□□ -1.48
LIG3P49916 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.83□□□□□ -1.48
LIG3P49916 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.83□□□□□ -1.48
LIG3P49916 AC009117.1-201ENST00000563948 554 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AC009101.1-201ENST00000568135 242 ntBASIC5.83□□□□□ -1.48
LIG3P49916 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.83□□□□□ -1.48
LIG3P49916 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.83□□□□□ -1.48
LIG3P49916 AC006504.8-201ENST00000621046 635 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AC000123.2-201ENST00000623124 461 ntBASIC5.83□□□□□ -1.48
LIG3P49916 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
LIG3P49916 SNORA17.5-201ENST00000630429 132 ntBASIC5.83□□□□□ -1.48
LIG3P49916 SAMMSON-227ENST00000642114 1199 ntBASIC5.83□□□□□ -1.48
LIG3P49916 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
LIG3P49916 NMD3P1-201ENST00000439704 1488 ntBASIC5.83□□□□□ -1.48
LIG3P49916 AL034549.2-201ENST00000618285 3373 ntBASIC5.83□□□□□ -1.48
LIG3P49916 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
LIG3P49916 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 Y_RNA.86-201ENST00000363020 111 ntBASIC5.82□□□□□ -1.48
LIG3P49916 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 SNORA20.2-201ENST00000383922 131 ntBASIC5.82□□□□□ -1.48
LIG3P49916 RNU6-1293P-201ENST00000384077 107 ntBASIC5.82□□□□□ -1.48
LIG3P49916 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
LIG3P49916 AL356421.1-201ENST00000403255 413 ntBASIC5.82□□□□□ -1.48
LIG3P49916 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG3P49916 MRPL50P2-201ENST00000416821 482 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.82□□□□□ -1.48
LIG3P49916 AC119618.1-201ENST00000434191 222 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AC012512.1-201ENST00000446594 718 ntBASIC5.82□□□□□ -1.48
LIG3P49916 FDX1P2-201ENST00000450769 375 ntBASIC5.82□□□□□ -1.48
LIG3P49916 HMGB1P15-201ENST00000453854 435 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AC083798.1-201ENST00000472671 131 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG3P49916 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms