Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXC9P31274 LINC02471-203ENST00000641941 4752 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 RNU6-584P-201ENST00000410350 95 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 RNA5SP296-201ENST00000410523 111 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXC9P31274 BX842559.1-201ENST00000419615 532 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXC9P31274 AC017083.1-201ENST00000428093 483 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 ARF4P4-201ENST00000439608 520 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AC000041.1-201ENST00000439655 175 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 CYCSP32-201ENST00000440548 321 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXC9P31274 AL035407.2-201ENST00000454090 378 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 U3.44-201ENST00000458938 192 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXC9P31274 RN7SL809P-201ENST00000482040 297 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC9P31274 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXC9P31274 RNU6-276P-201ENST00000516114 96 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 RN7SKP57-201ENST00000517248 293 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC9P31274 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXC9P31274 AL121766.1-201ENST00000547436 487 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 TRAV15-201ENST00000556680 249 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AC018754.1-201ENST00000607486 925 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 MIR7851-201ENST00000610611 160 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 U4.6-201ENST00000621618 127 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC9P31274 AL732618.1-201ENST00000623251 301 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 AP002967.1-201ENST00000624203 539 ntBASIC4.79□□□□□ -1.64
HOXC9P31274 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC9P31274 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC9P31274 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC9P31274 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC9P31274 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC9P31274 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC9P31274 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC9P31274 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC9P31274 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC9P31274 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC9P31274 AL133383.2-201ENST00000622958 2336 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 METTL21EP-201ENST00000298105 713 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXC9P31274 RN7SKP97-201ENST00000410966 333 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 HSFY4P-201ENST00000415994 1181 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AC017079.2-201ENST00000416102 485 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXC9P31274 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC9P31274 AC005019.1-201ENST00000436455 431 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 HSFY3P-201ENST00000444242 1191 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 GTF2IP12-201ENST00000456547 356 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 RPL21P10-201ENST00000463521 490 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC9P31274 AC111193.1-201ENST00000504097 155 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC9P31274 AC010460.2-201ENST00000509054 677 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 RNU2-27P-201ENST00000516185 142 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC9P31274 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC9P31274 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC9P31274 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXC9P31274 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC9P31274 AC011471.1-201ENST00000585766 187 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXC9P31274 AL022067.1-201ENST00000602426 454 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AC068790.5-201ENST00000602741 355 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AC005000.2-201ENST00000605468 310 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AC096586.1-201ENST00000610267 561 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 AL590396.4-201ENST00000636779 956 ntBASIC4.78□□□□□ -1.64
HOXC9P31274 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXC9P31274 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXC9P31274 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC9P31274 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.77□□□□□ -1.65
HOXC9P31274 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC9P31274 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 AC068254.2-201ENST00000623938 3577 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 MAPK10-253ENST00000641010 4072 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC9P31274 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC9P31274 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC9P31274 AC106883.1-201ENST00000418805 562 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 OSTCP5-201ENST00000425293 453 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 MTCYBP32-201ENST00000427945 1084 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 AL591503.2-201ENST00000442314 1005 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 ARL5AP2-201ENST00000444698 533 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC9P31274 DUXAP8-207ENST00000456786 622 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC9P31274 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC9P31274 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC9P31274 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.77□□□□□ -1.65
HOXC9P31274 MIR4509-3-201ENST00000578671 94 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 MIR4509-2-201ENST00000583920 94 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 AC006272.2-201ENST00000594725 163 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms