Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC091515.1-201ENST00000548110 679 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.16□□□□□ -1.9
HMGA1P17096 AL591516.1-201ENST00000611326 274 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 AC078899.5-201ENST00000612475 178 ntBASIC3.16□□□□□ -1.9
HMGA1P17096 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC3.16□□□□□ -1.9
HMGA1P17096 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HMGA1P17096 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
HMGA1P17096 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.15□□□□□ -1.91
HMGA1P17096 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.15□□□□□ -1.91
HMGA1P17096 RNA5SP502-201ENST00000362694 119 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.15□□□□□ -1.91
HMGA1P17096 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
HMGA1P17096 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.15□□□□□ -1.91
HMGA1P17096 AC004801.2-202ENST00000463559 283 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 AC037198.2-201ENST00000478845 733 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 RN7SL20P-201ENST00000488827 297 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
HMGA1P17096 RN7SKP272-201ENST00000516988 232 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.15□□□□□ -1.91
HMGA1P17096 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.15□□□□□ -1.91
HMGA1P17096 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
HMGA1P17096 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.15□□□□□ -1.91
HMGA1P17096 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 CYCSP41-201ENST00000616920 296 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 AC131238.1-201ENST00000617135 328 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.15□□□□□ -1.91
HMGA1P17096 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HMGA1P17096 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HMGA1P17096 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
HMGA1P17096 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HMGA1P17096 AL451142.2-201ENST00000429076 2090 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 SPATA2P1-201ENST00000431223 2055 ntBASIC3.15□□□□□ -1.91
HMGA1P17096 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.14□□□□□ -1.91
HMGA1P17096 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HMGA1P17096 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.14□□□□□ -1.91
HMGA1P17096 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HMGA1P17096 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HMGA1P17096 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.14□□□□□ -1.91
HMGA1P17096 AL603766.1-201ENST00000407763 664 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 MIR1289-1-201ENST00000408836 144 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 RPL7P8-201ENST00000411964 730 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.14□□□□□ -1.91
HMGA1P17096 OR6C71P-201ENST00000432580 913 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.14□□□□□ -1.91
HMGA1P17096 AC112492.1-201ENST00000449607 712 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 ST13P14-201ENST00000474095 734 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 RPS4XP13-201ENST00000483219 789 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC3.14□□□□□ -1.91
HMGA1P17096 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.14□□□□□ -1.91
HMGA1P17096 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC3.14□□□□□ -1.91
HMGA1P17096 AC090136.1-201ENST00000520009 240 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.14□□□□□ -1.91
HMGA1P17096 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.14□□□□□ -1.91
HMGA1P17096 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.14□□□□□ -1.91
HMGA1P17096 AC124856.1-201ENST00000600819 896 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 MIR7106-201ENST00000612419 65 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 AC007318.2-201ENST00000620999 243 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 MIR6852-201ENST00000621699 66 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 AC006840.1-201ENST00000623069 542 ntBASIC3.14□□□□□ -1.91
HMGA1P17096 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.14□□□□□ -1.91
HMGA1P17096 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.14□□□□□ -1.91
HMGA1P17096 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.14□□□□□ -1.91
HMGA1P17096 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.14□□□□□ -1.91
HMGA1P17096 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.13□□□□□ -1.91
HMGA1P17096 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HMGA1P17096 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HMGA1P17096 U3.11-201ENST00000364476 212 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.13□□□□□ -1.91
HMGA1P17096 AC073136.2-201ENST00000417282 849 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 AC006960.1-201ENST00000419980 153 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.13□□□□□ -1.91
HMGA1P17096 SETP5-201ENST00000437270 562 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 AL135938.1-201ENST00000443141 297 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 RPL37P4-201ENST00000448908 268 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.13□□□□□ -1.91
HMGA1P17096 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.13□□□□□ -1.91
HMGA1P17096 RNA5SP217-201ENST00000515959 91 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 AC092851.1-201ENST00000535964 478 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.13□□□□□ -1.91
HMGA1P17096 AC006504.3-201ENST00000586818 523 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 BMS1P7-201ENST00000602440 1052 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 MIR7153-201ENST00000637758 57 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HMGA1P17096 AL645568.2-201ENST00000432815 1337 ntBASIC3.13□□□□□ -1.91
HMGA1P17096 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.13□□□□□ -1.91
HMGA1P17096 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.13□□□□□ -1.91
HMGA1P17096 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HMGA1P17096 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HMGA1P17096 AL672296.1-201ENST00000427780 2158 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HMGA1P17096 AL035425.3-201ENST00000564206 4996 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HMGA1P17096 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HMGA1P17096 RNU6-7-201ENST00000364784 107 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 RNU6-8-201ENST00000365467 107 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 RNU2-22P-201ENST00000411266 212 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 RNA5SP107-201ENST00000411358 122 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 RPL31P12-201ENST00000422587 358 ntBASIC3.12□□□□□ -1.91
HMGA1P17096 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.12□□□□□ -1.91
HMGA1P17096 GTF2IP23-201ENST00000423746 351 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms