Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.92□□□□□ -1.78
LMX1BO60663 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
LMX1BO60663 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.92□□□□□ -1.78
LMX1BO60663 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
LMX1BO60663 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.92□□□□□ -1.78
LMX1BO60663 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
LMX1BO60663 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
LMX1BO60663 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LMX1BO60663 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
LMX1BO60663 AC067945.1-201ENST00000342609 618 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 RNU6-500P-201ENST00000362349 107 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 RNU6-621P-201ENST00000364752 109 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
LMX1BO60663 Y_RNA.553-201ENST00000384670 102 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 Y_RNA.559-201ENST00000384686 107 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 MIR525-201ENST00000384978 85 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 MT-TH-201ENST00000387441 69 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 RN7SKP263-201ENST00000411194 309 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 RPS12P10-201ENST00000427031 377 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 PRELID3BP10-201ENST00000431957 584 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 RPEP2-201ENST00000432149 701 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
LMX1BO60663 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.91□□□□□ -1.78
LMX1BO60663 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.91□□□□□ -1.78
LMX1BO60663 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC093155.1-201ENST00000440164 826 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.91□□□□□ -1.78
LMX1BO60663 RPL12P26-201ENST00000452430 487 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LMX1BO60663 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC012158.1-204ENST00000483430 465 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 NCOR1P1-202ENST00000486162 291 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AL035404.1-201ENST00000497982 568 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AC107401.1-201ENST00000503426 685 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 DYNLL1P6-201ENST00000503440 264 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC087808.1-201ENST00000520501 361 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AC090151.1-201ENST00000520784 730 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.91□□□□□ -1.78
LMX1BO60663 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.91□□□□□ -1.78
LMX1BO60663 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.91□□□□□ -1.78
LMX1BO60663 MIR3939-201ENST00000582614 106 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 HMGB2P1-201ENST00000591146 634 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.91□□□□□ -1.78
LMX1BO60663 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC023043.4-201ENST00000612081 449 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.91□□□□□ -1.78
LMX1BO60663 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LMX1BO60663 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LMX1BO60663 AC090582.1-201ENST00000636321 199 ntBASIC3.91□□□□□ -1.78
LMX1BO60663 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
LMX1BO60663 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
LMX1BO60663 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.91□□□□□ -1.78
LMX1BO60663 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
LMX1BO60663 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.9□□□□□ -1.78
LMX1BO60663 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
LMX1BO60663 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.9□□□□□ -1.78
LMX1BO60663 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.78
LMX1BO60663 AC108467.2-201ENST00000617640 1597 ntBASIC3.9□□□□□ -1.78
LMX1BO60663 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC3.9□□□□□ -1.78
LMX1BO60663 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.9□□□□□ -1.78
LMX1BO60663 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.9□□□□□ -1.79
LMX1BO60663 RNA5SP388-201ENST00000362584 119 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 RNU4-21P-201ENST00000362802 126 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 RNA5SP509-201ENST00000364577 119 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LMX1BO60663 OR5H15-201ENST00000383696 930 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 RNU1-44P-201ENST00000384453 163 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 MIR16-1-201ENST00000385271 89 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 SNORA57.1-201ENST00000391227 145 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 MIR1303-201ENST00000408625 86 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 AF274854.1-201ENST00000413236 615 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 MRPS36P1-201ENST00000421291 307 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 RAD23BP1-201ENST00000421404 1227 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.9□□□□□ -1.79
LMX1BO60663 PDSS1P1-201ENST00000422953 1114 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 AL022400.1-201ENST00000423946 935 ntBASIC3.9□□□□□ -1.79
LMX1BO60663 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms