Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC011742.2-201ENST00000443818 352 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 EEF1A1P1-201ENST00000447052 739 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 NXT1P1-201ENST00000458481 316 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 RPL5P30-201ENST00000465511 891 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AC098847.1-201ENST00000473094 348 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 RPS27AP1-201ENST00000475545 471 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 TRBV1-201ENST00000476502 284 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AC008945.1-201ENST00000505144 499 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 SNORD46.2-201ENST00000516021 102 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 RNU6-64P-201ENST00000517119 105 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 IGHV3-57-201ENST00000520143 280 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AL133271.1-201ENST00000538229 291 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AC106782.4-201ENST00000568264 210 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 MIR6768-201ENST00000610734 72 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AC011890.2-201ENST00000613393 294 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 ATP5A1P2-202ENST00000616464 443 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AL136313.1-201ENST00000624804 202 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 EXOC5P1-201ENST00000510543 1969 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 AC104837.1-201ENST00000444644 1587 ntBASIC6.74□□□□□ -1.33
LIMD1Q9UGP4 MROH3P-201ENST00000435735 2676 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 GABPAP-201ENST00000419271 1356 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC009951.1-201ENST00000623674 2614 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 RNU6-562P-201ENST00000362731 107 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 Y_RNA.463-201ENST00000384271 102 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 RNA5SP107-201ENST00000411358 122 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 NRBF2P3-201ENST00000432731 865 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC092162.1-201ENST00000432828 434 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC127537.2-201ENST00000439258 465 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 RPL21P23-201ENST00000446654 460 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AL596266.1-201ENST00000448132 400 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 YWHAEP1-201ENST00000453697 763 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC005008.1-201ENST00000456151 612 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 SCARNA18-201ENST00000459004 134 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC116533.1-201ENST00000459748 321 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC022034.3-201ENST00000471393 478 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC009812.2-201ENST00000517657 457 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 RANP3-201ENST00000530970 276 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 BNIP3P16-201ENST00000589779 534 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AL669831.4-202ENST00000590817 238 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC127024.6-201ENST00000621598 424 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 AC110597.1-201ENST00000562669 3176 ntBASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.73□□□□□ -1.33
LIMD1Q9UGP4 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC020658.2-201ENST00000559030 4020 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 MIR323A-201ENST00000362199 86 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 RNU6-128P-201ENST00000383976 107 ntBASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms