Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 KCTD9P3-201ENST00000434597 1169 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 UBE2V1P5-201ENST00000440070 405 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC092809.1-201ENST00000441469 474 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 RANP8-201ENST00000444720 713 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 HMGN2P7-201ENST00000456186 273 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 RPL9P32-201ENST00000464118 620 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC073522.1-201ENST00000483312 377 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 RPS3AP6-201ENST00000484430 795 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 RPL7P24-201ENST00000493052 752 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC112198.4-201ENST00000515450 351 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
SKA3Q8IX90 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC095057.3-201ENST00000567102 1157 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC120057.2-201ENST00000571520 271 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 TMF1P1-201ENST00000576058 373 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 MIR3186-201ENST00000577404 85 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AL592436.1-201ENST00000605135 558 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC005014.3-201ENST00000605985 190 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AL592295.2-201ENST00000612578 206 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC008759.3-201ENST00000613300 508 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SKA3Q8IX90 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 MIR6500-201ENST00000622700 86 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.45□□□□□ -1.86
SKA3Q8IX90 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.45□□□□□ -1.86
SKA3Q8IX90 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SKA3Q8IX90 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC073055.1-201ENST00000456901 1621 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 RNA5SP391-201ENST00000363456 119 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 RNU6-207P-201ENST00000384137 107 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL035405.1-201ENST00000400795 710 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 DNAJC19P6-201ENST00000401853 280 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL355615.1-201ENST00000406187 641 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL024507.1-201ENST00000412741 274 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC004022.2-201ENST00000413824 193 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 OR5AW1P-201ENST00000426334 1006 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 ARF4P2-201ENST00000430209 526 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC096638.2-201ENST00000434965 711 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 HMGB1P45-201ENST00000435986 653 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 RPL21P89-201ENST00000444021 467 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC004801.2-202ENST00000463559 283 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL049830.2-201ENST00000480072 201 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 PRELID3BP5-201ENST00000508612 460 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC026726.1-201ENST00000512859 601 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 NDUFA5P2-201ENST00000519723 344 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL389895.1-201ENST00000554127 252 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL606490.9-201ENST00000603331 271 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AP002906.1-201ENST00000603405 233 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 BNIP3P4-201ENST00000604946 565 ntBASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.44□□□□□ -1.86
SKA3Q8IX90 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms