Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 HMGB1P45-201ENST00000435986 653 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 MTND5P14-201ENST00000441481 1267 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 DPPA3P1-201ENST00000448050 469 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC243772.1-201ENST00000451620 410 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.13□□□□□ -1.59
USP39Q53GS9 MTCO3P11-201ENST00000455103 774 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC006967.1-201ENST00000467608 589 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 RN7SL189P-201ENST00000468631 289 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 RN7SL354P-201ENST00000469282 294 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 RPL23AP72-201ENST00000492447 435 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 GAPDHP56-201ENST00000506031 988 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 RNU6-1153P-201ENST00000516760 105 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC087808.1-201ENST00000520501 361 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AL049870.4-201ENST00000555741 486 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 PSMB7P1-201ENST00000556349 514 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC006960.3-201ENST00000561845 705 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AP005119.2-201ENST00000579735 1105 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.13□□□□□ -1.59
USP39Q53GS9 PRPF19P1-201ENST00000584766 898 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC105254.2-201ENST00000603636 436 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC008814.1-201ENST00000603797 406 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 SEPT7P9-203ENST00000604116 343 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AP001521.2-201ENST00000608772 546 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC091834.1-201ENST00000614543 472 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 MIR6839-201ENST00000620425 113 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC024023.1-201ENST00000624530 922 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 ADAM5-202ENST00000399789 1942 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 SEC63P2-201ENST00000503863 1939 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AL450326.2-201ENST00000421913 1962 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.12□□□□□ -1.59
USP39Q53GS9 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.12□□□□□ -1.59
USP39Q53GS9 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP39Q53GS9 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP39Q53GS9 Y_RNA.9-201ENST00000362354 101 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 RN7SKP113-201ENST00000363891 295 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 RN7SKP224-201ENST00000364140 325 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP39Q53GS9 Y_RNA.453-201ENST00000384223 109 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 RNU6-297P-201ENST00000384636 107 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 RPL12P9-201ENST00000412942 488 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 AC233728.2-201ENST00000425348 757 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 AC016712.1-201ENST00000431088 378 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 YWHAZP2-201ENST00000440317 728 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC5.12□□□□□ -1.59
USP39Q53GS9 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.12□□□□□ -1.59
USP39Q53GS9 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 GAPDHP39-201ENST00000481866 979 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 VPS26AP1-201ENST00000483197 979 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AL049874.2-201ENST00000492636 288 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP39Q53GS9 MTND3P22-201ENST00000510932 243 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 MTCO1P35-201ENST00000515270 228 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 IGKV2D-10-201ENST00000520194 281 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC5.12□□□□□ -1.59
USP39Q53GS9 AC107918.3-201ENST00000533272 382 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.12□□□□□ -1.59
USP39Q53GS9 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.12□□□□□ -1.59
USP39Q53GS9 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.12□□□□□ -1.59
USP39Q53GS9 AL049634.3-201ENST00000604968 457 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AC138649.3-201ENST00000622154 254 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AC124864.2-201ENST00000624736 186 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP39Q53GS9 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.12□□□□□ -1.59
USP39Q53GS9 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP39Q53GS9 TCP11X1-202ENST00000622971 1372 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 CASC19-280ENST00000642102 1351 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AC135352.1-201ENST00000506173 1418 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AC004817.4-201ENST00000602396 3625 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 AP002001.2-201ENST00000529025 1469 ntBASIC5.12□□□□□ -1.59
USP39Q53GS9 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.12□□□□□ -1.59
USP39Q53GS9 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
USP39Q53GS9 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms