Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HLA-DMBP28068 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 AC008739.3-201ENST00000603262 127 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 RNU1-30P-201ENST00000606575 163 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 AC112200.1-201ENST00000625015 234 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 AC012442.3-202ENST00000636742 206 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 AC138649.5-201ENST00000637456 137 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 AC119674.1-207ENST00000641355 633 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
HLA-DMBP28068 GABPAP-201ENST00000419271 1356 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
HLA-DMBP28068 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HLA-DMBP28068 ZNF285B-201ENST00000561698 1767 ntBASIC2.72□□□□□ -1.97
HLA-DMBP28068 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
HLA-DMBP28068 NMD3P1-201ENST00000439704 1488 ntBASIC2.71□□□□□ -1.97
HLA-DMBP28068 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
HLA-DMBP28068 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 RNU6-317P-201ENST00000384031 107 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 SNORD3H-201ENST00000384486 214 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 U8.11-201ENST00000384699 133 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 U8.12-201ENST00000384701 133 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 PVALB-202ENST00000404171 422 ntTSL 2 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC245054.1-201ENST00000420944 258 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AL031736.2-201ENST00000426573 787 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC007563.3-201ENST00000433233 371 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 U8.18-201ENST00000459285 133 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 RPL6P9-201ENST00000466502 859 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC034236.1-201ENST00000469891 373 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 HMGB3P14-201ENST00000494195 599 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 RPL5P23-201ENST00000496040 868 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 MTCO1P30-201ENST00000515244 580 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 SNORA70.18-201ENST00000516696 98 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 NAT2-202ENST00000520116 716 ntTSL 3 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 BNIP3P38-201ENST00000601117 544 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 AP004372.1-201ENST00000604842 844 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 HMGB1P51-201ENST00000605166 638 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AL357559.1-201ENST00000622228 274 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 AL732618.1-201ENST00000623251 301 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 AL034408.1-202ENST00000636088 415 ntBASIC2.71□□□□□ -1.98
HLA-DMBP28068 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-DMBP28068 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC2.71□□□□□ -1.98
HLA-DMBP28068 AC068647.1-201ENST00000489539 2265 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 ZNF33CP-201ENST00000432492 2030 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
HLA-DMBP28068 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 RNU6-185P-201ENST00000384421 107 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 RNA5SP171-201ENST00000391071 115 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 RPL21P17-201ENST00000397467 475 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 GSTA12P-201ENST00000402398 508 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 DBIP2-201ENST00000419076 262 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 AL035423.1-201ENST00000420331 213 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 SDCBPP2-201ENST00000424643 885 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 AL451062.2-201ENST00000427515 271 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 MRPS18BP2-201ENST00000434310 759 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 ELOCP11-201ENST00000436690 332 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 ELOCP16-201ENST00000444494 332 ntBASIC2.7□□□□□ -1.98
HLA-DMBP28068 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.7□□□□□ -1.98
HLA-DMBP28068 HMGB1P26-201ENST00000452520 628 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms