Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.16□□□□□ -1.9
COL5A1P20908 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.16□□□□□ -1.9
COL5A1P20908 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.16□□□□□ -1.9
COL5A1P20908 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC3.16□□□□□ -1.9
COL5A1P20908 MIR4769-201ENST00000584126 77 ntBASIC3.16□□□□□ -1.9
COL5A1P20908 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.16□□□□□ -1.9
COL5A1P20908 IGHV3-29-201ENST00000604817 344 ntBASIC3.16□□□□□ -1.9
COL5A1P20908 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL5A1P20908 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL5A1P20908 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL5A1P20908 AC087190.4-201ENST00000574616 8334 ntBASIC3.16□□□□□ -1.9
COL5A1P20908 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
COL5A1P20908 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.15□□□□□ -1.9
COL5A1P20908 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.15□□□□□ -1.9
COL5A1P20908 AL645568.2-201ENST00000432815 1337 ntBASIC3.15□□□□□ -1.9
COL5A1P20908 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
COL5A1P20908 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
COL5A1P20908 MIR30E-201ENST00000362104 92 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 MIR422A-201ENST00000362286 90 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC3.15□□□□□ -1.91
COL5A1P20908 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A1P20908 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.15□□□□□ -1.91
COL5A1P20908 AL356968.1-201ENST00000416622 474 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A1P20908 AL139132.1-201ENST00000431587 344 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC3.15□□□□□ -1.91
COL5A1P20908 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC3.15□□□□□ -1.91
COL5A1P20908 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A1P20908 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.15□□□□□ -1.91
COL5A1P20908 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.15□□□□□ -1.91
COL5A1P20908 NDUFB9P3-201ENST00000521269 501 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A1P20908 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.15□□□□□ -1.91
COL5A1P20908 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A1P20908 AC025946.2-201ENST00000603398 234 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 AC103881.1-201ENST00000603476 538 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 AC107308.1-201ENST00000615897 301 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 AC074140.1-201ENST00000621617 208 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 AF117829.1-206ENST00000621883 3802 ntBASIC3.15□□□□□ -1.91
COL5A1P20908 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.15□□□□□ -1.91
COL5A1P20908 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.15□□□□□ -1.91
COL5A1P20908 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.15□□□□□ -1.91
COL5A1P20908 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A1P20908 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.15□□□□□ -1.91
COL5A1P20908 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.14□□□□□ -1.91
COL5A1P20908 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC3.14□□□□□ -1.91
COL5A1P20908 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.14□□□□□ -1.91
COL5A1P20908 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.14□□□□□ -1.91
COL5A1P20908 AC093755.1-201ENST00000512950 1023 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 RNU1-143P-201ENST00000516296 146 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.14□□□□□ -1.91
COL5A1P20908 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.14□□□□□ -1.91
COL5A1P20908 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL5A1P20908 AC005242.1-201ENST00000585658 438 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 U1.23-201ENST00000610293 146 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 RNU1-68P-201ENST00000615382 146 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 U1.39-201ENST00000621562 146 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.14□□□□□ -1.91
COL5A1P20908 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL5A1P20908 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL5A1P20908 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL5A1P20908 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 RNU6-55P-201ENST00000411092 107 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 RNU6-954P-201ENST00000411355 107 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 MRPS31P2-201ENST00000451581 518 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 DNAJC19P1-201ENST00000455312 319 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 RNU6-775P-201ENST00000459318 96 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 VWA8P1-201ENST00000510889 176 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 AC091826.1-201ENST00000514065 313 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.14□□□□□ -1.91
COL5A1P20908 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.14□□□□□ -1.91
COL5A1P20908 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.14□□□□□ -1.91
COL5A1P20908 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.14□□□□□ -1.91
COL5A1P20908 MIR2682-201ENST00000580305 110 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A1P20908 RNU6-84P-201ENST00000607737 102 ntBASIC3.14□□□□□ -1.91
COL5A1P20908 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
COL5A1P20908 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
COL5A1P20908 AC012020.1-201ENST00000624541 1728 ntBASIC3.13□□□□□ -1.91
COL5A1P20908 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A1P20908 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.13□□□□□ -1.91
COL5A1P20908 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A1P20908 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A1P20908 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A1P20908 BX679664.1-201ENST00000434429 253 ntBASIC3.13□□□□□ -1.91
COL5A1P20908 AC105272.1-201ENST00000438604 198 ntBASIC3.13□□□□□ -1.91
COL5A1P20908 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.13□□□□□ -1.91
COL5A1P20908 MTCO3P20-201ENST00000454926 688 ntBASIC3.13□□□□□ -1.91
COL5A1P20908 RPL23AP67-201ENST00000465341 474 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms