Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL513533.1-201ENST00000453728 415 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC133473.1-201ENST00000455173 299 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 MTND6P6-201ENST00000478031 263 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 VPS26AP1-201ENST00000483197 979 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 CEACAMP10-202ENST00000495431 496 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC087808.1-201ENST00000520501 361 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC090281.1-201ENST00000523019 276 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC090819.1-201ENST00000523800 1111 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 DUXAP5-201ENST00000529668 529 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AP001317.1-201ENST00000531194 960 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC090695.1-201ENST00000561269 1222 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC069061.3-201ENST00000582254 823 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC068790.5-201ENST00000602741 355 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 HSPE1P14-201ENST00000605812 302 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC080013.3-201ENST00000606839 578 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC097655.1-201ENST00000635075 318 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 OR4K15-201ENST00000305051 1216 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 RNU1-32P-201ENST00000363937 159 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 RNU6-1300P-201ENST00000391046 108 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 RNU2-42P-201ENST00000410697 113 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 COX6CP17-201ENST00000421389 185 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 NIPA2P1-201ENST00000426223 976 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 RWDD4P2-201ENST00000426392 563 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL513175.1-201ENST00000431492 780 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC073143.1-201ENST00000436316 395 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 MTCO2P20-201ENST00000437339 673 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL162591.2-201ENST00000449634 317 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC098826.2-201ENST00000452011 651 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 HMGB3P21-201ENST00000452483 547 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL121877.1-201ENST00000453704 622 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 RFC5P1-201ENST00000454419 874 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC108043.1-201ENST00000512696 574 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 PHBP17-201ENST00000528576 541 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL352979.3-201ENST00000553515 247 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 MIR4512-201ENST00000583257 77 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 CLIC4P2-201ENST00000601934 717 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC069545.1-201ENST00000605671 358 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC113194.1-201ENST00000606037 500 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AL354760.1-201ENST00000608357 643 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC019193.2-201ENST00000610012 634 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC022509.4-201ENST00000621404 572 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 AP006248.2-201ENST00000623309 592 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC019278.1-201ENST00000623516 479 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 AC120349.3-201ENST00000624377 529 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms