Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CHD3Q12873 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.02□□□□□ -1.93
CHD3Q12873 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.02□□□□□ -1.93
CHD3Q12873 AL136116.1-201ENST00000403591 381 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 MTHFD2P2-201ENST00000407725 247 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.02□□□□□ -1.93
CHD3Q12873 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHD3Q12873 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.02□□□□□ -1.93
CHD3Q12873 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 SETD6P1-201ENST00000444575 317 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 MRPS31P2-201ENST00000451581 518 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AC025518.1-201ENST00000479856 347 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 FTH1P24-201ENST00000503502 462 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 KCTD9P6-201ENST00000522306 950 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.02□□□□□ -1.93
CHD3Q12873 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.02□□□□□ -1.93
CHD3Q12873 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.02□□□□□ -1.93
CHD3Q12873 MTCO3P22-201ENST00000603219 784 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AC006077.1-201ENST00000604746 343 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AL033523.1-201ENST00000605153 153 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 AL159169.2-201ENST00000610061 1269 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHD3Q12873 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHD3Q12873 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.02□□□□□ -1.93
CHD3Q12873 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CHD3Q12873 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CHD3Q12873 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHD3Q12873 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.02□□□□□ -1.93
CHD3Q12873 AL691447.1-201ENST00000419456 387 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.02□□□□□ -1.93
CHD3Q12873 SDCBPP2-201ENST00000424643 885 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.02□□□□□ -1.93
CHD3Q12873 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.02□□□□□ -1.93
CHD3Q12873 AL357552.1-201ENST00000445254 415 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 BTF3P5-201ENST00000457252 467 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHD3Q12873 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.02□□□□□ -1.93
CHD3Q12873 AC011611.1-201ENST00000552179 197 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 AC008507.1-201ENST00000587506 734 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.02□□□□□ -1.93
CHD3Q12873 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.02□□□□□ -1.93
CHD3Q12873 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.02□□□□□ -1.93
CHD3Q12873 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHD3Q12873 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CHD3Q12873 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CHD3Q12873 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.01□□□□□ -1.93
CHD3Q12873 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHD3Q12873 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHD3Q12873 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.01□□□□□ -1.93
CHD3Q12873 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.01□□□□□ -1.93
CHD3Q12873 AL353743.1-202ENST00000431724 1695 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CHD3Q12873 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CHD3Q12873 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.01□□□□□ -1.93
CHD3Q12873 SKP1P1-201ENST00000438081 489 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 AC025750.2-201ENST00000442609 450 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.01□□□□□ -1.93
CHD3Q12873 NANOGNBP1-201ENST00000448444 480 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 S100A11P2-201ENST00000467589 312 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 AC084357.1-201ENST00000473404 255 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.01□□□□□ -1.93
CHD3Q12873 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.01□□□□□ -1.93
CHD3Q12873 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.01□□□□□ -1.93
CHD3Q12873 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.01□□□□□ -1.93
CHD3Q12873 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.01□□□□□ -1.93
CHD3Q12873 AC009948.4-201ENST00000604692 675 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 BRDTP1-201ENST00000605735 677 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 AC069209.1-201ENST00000619282 651 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.01□□□□□ -1.93
CHD3Q12873 CR392039.4-201ENST00000624968 501 ntBASIC3.01□□□□□ -1.93
CHD3Q12873 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHD3Q12873 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.01□□□□□ -1.93
CHD3Q12873 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHD3Q12873 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.01□□□□□ -1.93
CHD3Q12873 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.01□□□□□ -1.93
CHD3Q12873 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CHD3Q12873 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
CHD3Q12873 AC234772.1-201ENST00000377927 937 ntBASIC3□□□□□ -1.93
CHD3Q12873 TAF9BP1-201ENST00000396646 746 ntBASIC3□□□□□ -1.93
CHD3Q12873 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3□□□□□ -1.93
CHD3Q12873 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3□□□□□ -1.93
CHD3Q12873 AC005326.1-201ENST00000429197 123 ntBASIC3□□□□□ -1.93
CHD3Q12873 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3□□□□□ -1.93
CHD3Q12873 BX679664.1-201ENST00000434429 253 ntBASIC3□□□□□ -1.93
CHD3Q12873 AL353093.1-201ENST00000441292 436 ntBASIC3□□□□□ -1.93
CHD3Q12873 AC073387.1-201ENST00000453261 709 ntBASIC3□□□□□ -1.93
CHD3Q12873 AC004069.2-201ENST00000505438 1114 ntBASIC3□□□□□ -1.93
CHD3Q12873 ARL2BPP6-201ENST00000512757 439 ntBASIC3□□□□□ -1.93
CHD3Q12873 PHBP14-201ENST00000512887 367 ntBASIC3□□□□□ -1.93
CHD3Q12873 SCARNA20.6-201ENST00000517251 106 ntBASIC3□□□□□ -1.93
CHD3Q12873 AL121594.4-201ENST00000556211 1196 ntBASIC3□□□□□ -1.93
CHD3Q12873 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3□□□□□ -1.93
CHD3Q12873 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC3□□□□□ -1.93
CHD3Q12873 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms