Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HMGN2P28-201ENST00000606102 262 ntBASIC3.72□□□□□ -1.81
CDX1P47902 RN7SL722P-201ENST00000617780 284 ntBASIC3.72□□□□□ -1.81
CDX1P47902 RN7SL565P-201ENST00000618246 284 ntBASIC3.72□□□□□ -1.81
CDX1P47902 MIR6853-201ENST00000619642 74 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC012414.7-202ENST00000622705 1090 ntBASIC3.72□□□□□ -1.81
CDX1P47902 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.72□□□□□ -1.81
CDX1P47902 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 CDR1-202ENST00000625883 1485 ntBASIC3.72□□□□□ -1.81
CDX1P47902 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.71□□□□□ -1.81
CDX1P47902 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.71□□□□□ -1.81
CDX1P47902 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CDX1P47902 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CDX1P47902 FAM35DP-201ENST00000323387 2712 ntBASIC3.71□□□□□ -1.82
CDX1P47902 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 RNU4-92P-201ENST00000363783 136 ntBASIC3.71□□□□□ -1.82
CDX1P47902 SNORD82-201ENST00000365530 70 ntBASIC3.71□□□□□ -1.82
CDX1P47902 SNORD116.1-201ENST00000365628 92 ntBASIC3.71□□□□□ -1.82
CDX1P47902 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 Y_RNA.465-201ENST00000384293 102 ntBASIC3.71□□□□□ -1.82
CDX1P47902 ANAPC10P1-201ENST00000395991 556 ntBASIC3.71□□□□□ -1.82
CDX1P47902 CYB5AP4-201ENST00000396692 399 ntBASIC3.71□□□□□ -1.82
CDX1P47902 EIF5P1-201ENST00000400019 1231 ntBASIC3.71□□□□□ -1.82
CDX1P47902 MTND4LP20-201ENST00000402379 270 ntBASIC3.71□□□□□ -1.82
CDX1P47902 RNA5SP239-201ENST00000410218 129 ntBASIC3.71□□□□□ -1.82
CDX1P47902 RN7SKP267-201ENST00000410381 285 ntBASIC3.71□□□□□ -1.82
CDX1P47902 RSU1P3-201ENST00000412878 835 ntBASIC3.71□□□□□ -1.82
CDX1P47902 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC3.71□□□□□ -1.82
CDX1P47902 AC119751.6-201ENST00000416712 186 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.71□□□□□ -1.82
CDX1P47902 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 AC093698.1-201ENST00000423843 571 ntBASIC3.71□□□□□ -1.82
CDX1P47902 OR2B7P-201ENST00000429302 934 ntBASIC3.71□□□□□ -1.82
CDX1P47902 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.71□□□□□ -1.82
CDX1P47902 ELOCP8-201ENST00000439309 332 ntBASIC3.71□□□□□ -1.82
CDX1P47902 ELOCP15-201ENST00000442090 332 ntBASIC3.71□□□□□ -1.82
CDX1P47902 MTCO2P25-201ENST00000447065 681 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC073264.2-201ENST00000448886 166 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 RPS20P32-201ENST00000456044 356 ntBASIC3.71□□□□□ -1.82
CDX1P47902 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 SETP14-201ENST00000497538 873 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.71□□□□□ -1.82
CDX1P47902 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 AC007016.1-201ENST00000512110 244 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.71□□□□□ -1.82
CDX1P47902 OR5M7P-201ENST00000526140 972 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CDX1P47902 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.71□□□□□ -1.82
CDX1P47902 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.71□□□□□ -1.82
CDX1P47902 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.71□□□□□ -1.82
CDX1P47902 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.71□□□□□ -1.82
CDX1P47902 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 AC234771.5-201ENST00000600161 514 ntBASIC3.71□□□□□ -1.82
CDX1P47902 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.71□□□□□ -1.82
CDX1P47902 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.71□□□□□ -1.82
CDX1P47902 DPRXP5-201ENST00000604662 539 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC110741.2-201ENST00000605278 268 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC073968.1-201ENST00000618594 637 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AL022401.1-201ENST00000619498 108 ntBASIC3.71□□□□□ -1.82
CDX1P47902 AC009318.4-201ENST00000620496 486 ntBASIC3.71□□□□□ -1.82
CDX1P47902 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.71□□□□□ -1.82
CDX1P47902 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.71□□□□□ -1.82
CDX1P47902 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.71□□□□□ -1.82
CDX1P47902 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CDX1P47902 MTCO1P14-201ENST00000441695 1559 ntBASIC3.71□□□□□ -1.82
CDX1P47902 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
CDX1P47902 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
CDX1P47902 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.7□□□□□ -1.82
CDX1P47902 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
CDX1P47902 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CDX1P47902 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CDX1P47902 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
CDX1P47902 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CDX1P47902 AL391684.1-202ENST00000641293 1636 ntBASIC3.7□□□□□ -1.82
CDX1P47902 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CDX1P47902 AC105074.1-201ENST00000623380 3095 ntBASIC3.7□□□□□ -1.82
CDX1P47902 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms