Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC024560.2-201ENST00000507981 1497 ntBASIC3.28□□□□□ -1.88
USF1P22415 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.28□□□□□ -1.89
USF1P22415 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.27□□□□□ -1.89
USF1P22415 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USF1P22415 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.27□□□□□ -1.89
USF1P22415 RNA5SP399-201ENST00000364003 117 ntBASIC3.27□□□□□ -1.89
USF1P22415 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USF1P22415 SNORA70E-201ENST00000384492 135 ntBASIC3.27□□□□□ -1.89
USF1P22415 RNU6-328P-201ENST00000390887 106 ntBASIC3.27□□□□□ -1.89
USF1P22415 RPL21P17-201ENST00000397467 475 ntBASIC3.27□□□□□ -1.89
USF1P22415 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 PTP4A1P5-201ENST00000420305 455 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC087650.1-201ENST00000431445 468 ntBASIC3.27□□□□□ -1.89
USF1P22415 ATP5HP2-201ENST00000433885 485 ntBASIC3.27□□□□□ -1.89
USF1P22415 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 AF228730.2-201ENST00000438784 848 ntBASIC3.27□□□□□ -1.89
USF1P22415 AL356535.1-201ENST00000440335 398 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.27□□□□□ -1.89
USF1P22415 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC3.27□□□□□ -1.89
USF1P22415 PRSS3P4-201ENST00000453323 162 ntBASIC3.27□□□□□ -1.89
USF1P22415 NANOGP10-201ENST00000453325 895 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC025181.1-201ENST00000477507 416 ntBASIC3.27□□□□□ -1.89
USF1P22415 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.27□□□□□ -1.89
USF1P22415 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.27□□□□□ -1.89
USF1P22415 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.27□□□□□ -1.89
USF1P22415 NDUFA5P2-201ENST00000519723 344 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.27□□□□□ -1.89
USF1P22415 CIR1P1-201ENST00000524055 1133 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.27□□□□□ -1.89
USF1P22415 AC141257.3-201ENST00000572906 215 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.27□□□□□ -1.89
USF1P22415 AC087499.8-201ENST00000578406 226 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.27□□□□□ -1.89
USF1P22415 MRPS35P3-201ENST00000603189 709 ntBASIC3.27□□□□□ -1.89
USF1P22415 MIR486-1-201ENST00000612171 68 ntBASIC3.27□□□□□ -1.89
USF1P22415 AC095038.2-201ENST00000621464 1070 ntBASIC3.27□□□□□ -1.89
USF1P22415 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
USF1P22415 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
USF1P22415 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USF1P22415 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.26□□□□□ -1.89
USF1P22415 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USF1P22415 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USF1P22415 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.26□□□□□ -1.89
USF1P22415 BDP1P-201ENST00000582658 1990 ntBASIC3.26□□□□□ -1.89
USF1P22415 MIR423-201ENST00000362201 94 ntBASIC3.26□□□□□ -1.89
USF1P22415 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 OR52E6-202ENST00000379946 954 ntBASIC3.26□□□□□ -1.89
USF1P22415 U8.11-201ENST00000384699 133 ntBASIC3.26□□□□□ -1.89
USF1P22415 U8.12-201ENST00000384701 133 ntBASIC3.26□□□□□ -1.89
USF1P22415 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 AC093578.1-201ENST00000415219 368 ntBASIC3.26□□□□□ -1.89
USF1P22415 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.26□□□□□ -1.89
USF1P22415 AL591419.1-201ENST00000427423 339 ntBASIC3.26□□□□□ -1.89
USF1P22415 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.26□□□□□ -1.89
USF1P22415 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USF1P22415 AL365396.1-201ENST00000430854 671 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC091286.1-201ENST00000431233 461 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 AC069540.1-201ENST00000446320 988 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 U8.18-201ENST00000459285 133 ntBASIC3.26□□□□□ -1.89
USF1P22415 RPL31P61-201ENST00000496160 376 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 SNX5P1-201ENST00000505757 1041 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.26□□□□□ -1.89
USF1P22415 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.26□□□□□ -1.89
USF1P22415 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.26□□□□□ -1.89
USF1P22415 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.26□□□□□ -1.89
USF1P22415 OR8I1P-201ENST00000529291 931 ntBASIC3.26□□□□□ -1.89
USF1P22415 OR4A12P-201ENST00000530847 918 ntBASIC3.26□□□□□ -1.89
USF1P22415 YPEL5P3-201ENST00000547227 352 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.26□□□□□ -1.89
USF1P22415 AC022968.1-201ENST00000567372 442 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.26□□□□□ -1.89
USF1P22415 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.26□□□□□ -1.89
USF1P22415 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USF1P22415 SRGNP1-201ENST00000603392 451 ntBASIC3.26□□□□□ -1.89
USF1P22415 AL034351.1-201ENST00000605288 668 ntBASIC3.26□□□□□ -1.89
USF1P22415 AC004775.1-201ENST00000607389 753 ntBASIC3.26□□□□□ -1.89
USF1P22415 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.26□□□□□ -1.89
USF1P22415 AL591424.2-201ENST00000617023 128 ntBASIC3.26□□□□□ -1.89
USF1P22415 U6.107-201ENST00000637108 79 ntBASIC3.26□□□□□ -1.89
USF1P22415 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
USF1P22415 IPO8P1-201ENST00000455509 3109 ntBASIC3.26□□□□□ -1.89
USF1P22415 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.26□□□□□ -1.89
USF1P22415 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USF1P22415 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USF1P22415 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USF1P22415 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC3.25□□□□□ -1.89
USF1P22415 AC119744.1-201ENST00000454746 1715 ntBASIC3.25□□□□□ -1.89
USF1P22415 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms