Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.62□□□□□ -1.83
CLDN9O95484 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.62□□□□□ -1.83
CLDN9O95484 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
CLDN9O95484 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLDN9O95484 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 RNA5SP27-201ENST00000363839 119 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 SNORA11.2-201ENST00000408318 127 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 RNU6-628P-201ENST00000410675 107 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 AL357078.2-201ENST00000416486 427 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 RPL7P4-203ENST00000430239 730 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.61□□□□□ -1.83
CLDN9O95484 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 USP9YP7-201ENST00000436723 430 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.61□□□□□ -1.83
CLDN9O95484 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 AL500527.1-201ENST00000448532 255 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 USP9YP32-201ENST00000452432 430 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 MTCO3P16-201ENST00000454456 754 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 MTND2P30-201ENST00000456663 382 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.61□□□□□ -1.83
CLDN9O95484 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 AC010468.3-201ENST00000508225 458 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 PTGES3P3-201ENST00000511479 482 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 MTND2P26-201ENST00000528255 1029 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.61□□□□□ -1.83
CLDN9O95484 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 SNRPGP1-201ENST00000553864 222 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 AC015911.5-201ENST00000587076 451 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 AL359535.1-201ENST00000612100 1087 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 FP236240.3-201ENST00000623061 327 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 AC034229.5-201ENST00000624258 185 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 FAM157B-203ENST00000639350 358 ntBASIC3.61□□□□□ -1.83
CLDN9O95484 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.61□□□□□ -1.83
CLDN9O95484 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC3.61□□□□□ -1.83
CLDN9O95484 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLDN9O95484 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 ASNSP1-204ENST00000641977 1664 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 AC016716.1-201ENST00000265882 708 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.6□□□□□ -1.83
CLDN9O95484 AL359837.1-201ENST00000381357 287 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 RNU6-356P-201ENST00000384140 107 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 HMGB3P20-201ENST00000417997 600 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 RPL7P53-201ENST00000421245 739 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 AL451062.2-201ENST00000427515 271 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 MOB1AP1-201ENST00000430903 535 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.6□□□□□ -1.83
CLDN9O95484 UBE2V1P5-201ENST00000440070 405 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 BTBD7P2-201ENST00000441962 620 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 RNFT1P2-201ENST00000443064 757 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CLDN9O95484 RPL23AP15-201ENST00000450202 459 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 BX276092.4-201ENST00000452056 248 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.6□□□□□ -1.83
CLDN9O95484 AL035407.2-201ENST00000454090 378 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 AC099563.1-201ENST00000456086 418 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.6□□□□□ -1.83
CLDN9O95484 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.6□□□□□ -1.83
CLDN9O95484 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.6□□□□□ -1.83
CLDN9O95484 AC034236.1-201ENST00000469891 373 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 RPL23AP73-201ENST00000492507 471 ntBASIC3.6□□□□□ -1.83
CLDN9O95484 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.6□□□□□ -1.83
CLDN9O95484 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.6□□□□□ -1.83
CLDN9O95484 SCARNA14-201ENST00000516903 136 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms