Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC090971.4-201ENST00000560291 1800 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC079753.1-201ENST00000623243 3868 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 ZNF33CP-201ENST00000432492 2030 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 Y_RNA.184-201ENST00000363884 108 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 SNORA51.2-201ENST00000364595 132 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 SNORA24.1-201ENST00000384401 135 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 RNU6-831P-201ENST00000384548 107 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 UBE2V1P2-201ENST00000397758 440 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 RNA5SP198-201ENST00000410376 127 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 RNA5SP345-201ENST00000410646 108 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 OR6C66P-201ENST00000414917 930 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 RPL24P2-201ENST00000421023 475 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AL645937.1-202ENST00000421799 937 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 PPIAP10-201ENST00000438675 458 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 RPL23AP33-201ENST00000442301 452 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC079922.1-201ENST00000443291 359 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 CYCSP51-201ENST00000443545 318 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AL589765.3-201ENST00000446084 462 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC097359.1-201ENST00000447946 463 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC011225.1-201ENST00000457751 369 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 SCARNA15.1-201ENST00000516384 125 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC116917.1-201ENST00000520558 305 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 MIR4458-201ENST00000578872 75 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 NPIPB1P-202ENST00000588786 828 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC012669.1-201ENST00000603209 283 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AL161729.3-201ENST00000603533 673 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 RPSAP75-201ENST00000605848 301 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC103710.3-201ENST00000608157 948 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 U73479.1-201ENST00000618062 168 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC011155.2-201ENST00000623202 216 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 SNX18P3-202ENST00000565670 1750 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC009951.1-201ENST00000623674 2614 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AC073365.1-203ENST00000641055 1992 ntBASIC4.82□□□□□ -1.64
CCDC140Q96MF4 AKAP17BP-201ENST00000431706 2719 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 GABPAP-201ENST00000419271 1356 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms