Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 ZNF37BP-203ENST00000452306 1352 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 RNU6-1005P-201ENST00000384519 107 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AL138880.1-201ENST00000405824 642 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 COX6CP15-201ENST00000426313 211 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC016712.1-201ENST00000431088 378 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 MRPL50P1-201ENST00000431951 384 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 MTND1P33-201ENST00000446251 917 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 AL500522.2-201ENST00000448562 343 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AL353718.1-201ENST00000451028 517 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 NDUFA5P9-201ENST00000472609 340 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 HMGB1P38-201ENST00000490557 577 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 AL132838.2-201ENST00000492041 314 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC005798.1-201ENST00000513715 387 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AP003730.1-201ENST00000524605 285 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 MIR3690-201ENST00000580266 75 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC090425.2-201ENST00000608818 501 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 MIR6868-201ENST00000611215 58 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 AL356118.1-201ENST00000635272 1078 ntBASIC3.95□□□□□ -1.78
VPS39Q96JC1 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS39Q96JC1 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS39Q96JC1 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS39Q96JC1 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS39Q96JC1 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC027287.1-201ENST00000553115 1453 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS39Q96JC1 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 RNA5SP322-201ENST00000363617 119 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS39Q96JC1 RNU1-89P-201ENST00000384592 164 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 AL121972.1-201ENST00000402023 252 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 MTND4P22-201ENST00000413116 1169 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 HMGB3P5-201ENST00000428894 612 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS39Q96JC1 HMGB1P16-201ENST00000447155 540 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 RPS17P13-201ENST00000448974 407 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 RPS11P1-201ENST00000451072 473 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 RPL5P24-201ENST00000463742 885 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 RNF138P1-201ENST00000502765 546 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 RN7SKP244-201ENST00000516513 307 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC023575.1-201ENST00000580510 358 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 RN7SL600P-201ENST00000581811 299 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 MIR3138-201ENST00000585238 82 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 ZNF92P2-201ENST00000600543 1059 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC005776.1-201ENST00000603164 290 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 AL671309.1-201ENST00000603750 544 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 ARF4P1-201ENST00000605447 541 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 HMGB1P50-201ENST00000605814 607 ntBASIC3.94□□□□□ -1.78
VPS39Q96JC1 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS39Q96JC1 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS39Q96JC1 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS39Q96JC1 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms