Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC025627.2-201ENST00000576220 160 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 MIR5684-201ENST00000585074 65 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 SRGNP1-201ENST00000603392 451 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC007566.2-201ENST00000603642 413 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AL009028.1-201ENST00000604895 802 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 BNIP3P4-201ENST00000604946 565 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AL160281.1-201ENST00000605307 311 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC015813.4-201ENST00000610469 179 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AL391261.4-201ENST00000616012 481 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 U73479.1-201ENST00000618062 168 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AL354798.1-201ENST00000622505 329 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC091953.5-201ENST00000622919 233 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC020978.9-201ENST00000624380 1141 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 NOL8P1-201ENST00000508336 3529 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC007685.1-201ENST00000329806 452 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 MIR448-201ENST00000362131 111 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 SNORD35B-201ENST00000363660 87 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 RNU6-1243P-201ENST00000364028 107 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 VN1R8P-201ENST00000407739 893 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC073264.1-201ENST00000411508 416 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL445183.3-201ENST00000414168 502 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL606495.1-201ENST00000422100 813 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL358472.1-201ENST00000431295 329 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 PRELID3BP10-201ENST00000431957 584 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL512661.1-201ENST00000434586 1253 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 RPL36AP13-201ENST00000457490 317 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 KRT19P6-201ENST00000510983 209 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 SCARNA13-201ENST00000516672 275 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 OR4R3P-201ENST00000525084 838 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AP000916.1-201ENST00000533869 835 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AC006270.2-201ENST00000578523 652 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL451044.1-201ENST00000604867 238 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 MIR6868-201ENST00000611215 58 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 AL356118.1-201ENST00000635272 1078 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 MTND4P26-201ENST00000415971 1359 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 MTCO1P6-201ENST00000481192 1384 ntBASIC4.09□□□□□ -1.75
HDDC3Q8N4P3 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
HDDC3Q8N4P3 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
HDDC3Q8N4P3 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HDDC3Q8N4P3 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HDDC3Q8N4P3 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 RNA5SP119-201ENST00000362715 117 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 RPL17P35-201ENST00000432217 549 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AL138799.3-201ENST00000438968 350 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 RPS26P56-201ENST00000444468 240 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC087879.1-201ENST00000474343 374 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 RPS4XP15-201ENST00000489210 795 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 TMEM248P1-201ENST00000510579 951 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 PPBPP1-201ENST00000510807 373 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms