Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC006960.1-201ENST00000419980 153 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 FTH1P6-201ENST00000430768 320 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 MTND2P2-201ENST00000434633 945 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 RPL23AP22-201ENST00000437556 453 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 CST9LP2-201ENST00000437612 320 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 ATP5C1P1-201ENST00000441945 895 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC245517.2-201ENST00000442890 346 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 RPL21P23-201ENST00000446654 460 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 AC125238.1-201ENST00000448842 249 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 HMGB3P8-201ENST00000449709 577 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC115115.1-201ENST00000449927 248 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 RN7SL542P-201ENST00000467147 294 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC037198.2-201ENST00000478845 733 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA1P55317 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 SNORA67.7-201ENST00000516664 135 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC023632.4-201ENST00000517783 191 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 TRMT10BP1-201ENST00000519377 943 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AP001207.2-201ENST00000519490 539 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXA1P55317 AL049874.4-201ENST00000557593 255 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC092868.3-201ENST00000560515 784 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA1P55317 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA1P55317 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA1P55317 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA1P55317 AL356274.1-201ENST00000617064 410 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AL713922.2-201ENST00000619384 716 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AL356321.1-201ENST00000621360 228 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC039056.2-201ENST00000622261 511 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AC243312.2-201ENST00000623340 601 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 BANCR-201ENST00000624238 473 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 AC073476.4-201ENST00000628409 72 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA1P55317 MIR7153-201ENST00000637758 57 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA1P55317 MTCO1P14-201ENST00000441695 1559 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
FOXA1P55317 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
FOXA1P55317 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
FOXA1P55317 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 ELL2P4-201ENST00000446870 1376 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
FOXA1P55317 SNORA73.2-201ENST00000364946 201 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 RNU6-805P-201ENST00000365643 106 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 ATP5F1P3-201ENST00000397213 657 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 RNA5SP44-201ENST00000410446 133 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA1P55317 BX323014.1-201ENST00000412876 237 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 AC009237.5-201ENST00000414271 501 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 AC012065.2-201ENST00000421295 375 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AC093084.1-201ENST00000424233 687 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA1P55317 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 HSPD1P21-201ENST00000436541 245 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA1P55317 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA1P55317 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA1P55317 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA1P55317 LARP7P4-201ENST00000481075 878 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA1P55317 HMGN1P15-201ENST00000513870 295 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA1P55317 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA1P55317 OR5B10P-201ENST00000532869 642 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AC084757.1-201ENST00000559987 490 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA1P55317 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA1P55317 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AL590410.1-201ENST00000617925 333 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AL356863.1-201ENST00000623378 1080 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AL034408.1-202ENST00000636088 415 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AL392088.2-201ENST00000637607 285 ntBASIC3.18□□□□□ -1.9
FOXA1P55317 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA1P55317 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.18□□□□□ -1.9
FOXA1P55317 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
FOXA1P55317 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA1P55317 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA1P55317 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA1P55317 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA1P55317 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
FOXA1P55317 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA1P55317 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA1P55317 RNU6-386P-201ENST00000362650 107 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms