Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC145423.1-201ENST00000605712 336 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AC019193.2-201ENST00000610012 634 ntBASIC5.89□□□□□ -1.47
LIG3P49916 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 AC074140.1-201ENST00000621617 208 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AC010338.1-201ENST00000621823 717 ntBASIC5.89□□□□□ -1.47
LIG3P49916 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.89□□□□□ -1.47
LIG3P49916 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.89□□□□□ -1.47
LIG3P49916 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 KPNA2P2-201ENST00000419546 1489 ntBASIC5.89□□□□□ -1.47
LIG3P49916 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 AC011755.1-201ENST00000623763 2049 ntBASIC5.88□□□□□ -1.47
LIG3P49916 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
LIG3P49916 AL024474.1-201ENST00000404655 591 ntBASIC5.88□□□□□ -1.47
LIG3P49916 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 AL031736.2-201ENST00000426573 787 ntBASIC5.88□□□□□ -1.47
LIG3P49916 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 RPL7P54-201ENST00000438336 674 ntBASIC5.88□□□□□ -1.47
LIG3P49916 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG3P49916 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.88□□□□□ -1.47
LIG3P49916 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.88□□□□□ -1.47
LIG3P49916 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG3P49916 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.88□□□□□ -1.47
LIG3P49916 AC093166.4-201ENST00000457867 318 ntBASIC5.88□□□□□ -1.47
LIG3P49916 AC022364.2-201ENST00000457963 554 ntBASIC5.88□□□□□ -1.47
LIG3P49916 AC005726.1-201ENST00000494679 427 ntBASIC5.88□□□□□ -1.47
LIG3P49916 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.88□□□□□ -1.47
LIG3P49916 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC5.88□□□□□ -1.47
LIG3P49916 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG3P49916 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG3P49916 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.88□□□□□ -1.47
LIG3P49916 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.88□□□□□ -1.47
LIG3P49916 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG3P49916 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.88□□□□□ -1.47
LIG3P49916 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG3P49916 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 AC018552.1-201ENST00000562099 811 ntBASIC5.88□□□□□ -1.47
LIG3P49916 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.88□□□□□ -1.47
LIG3P49916 AC087283.1-201ENST00000604029 1074 ntBASIC5.88□□□□□ -1.47
LIG3P49916 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.88□□□□□ -1.47
LIG3P49916 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.88□□□□□ -1.47
LIG3P49916 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
LIG3P49916 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.88□□□□□ -1.47
LIG3P49916 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 AC104964.3-201ENST00000606115 2860 ntBASIC5.88□□□□□ -1.47
LIG3P49916 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIG3P49916 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.87□□□□□ -1.47
LIG3P49916 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
LIG3P49916 AC104260.2-201ENST00000623551 3497 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AC020633.1-201ENST00000468439 2247 ntBASIC5.87□□□□□ -1.47
LIG3P49916 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
LIG3P49916 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
LIG3P49916 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
LIG3P49916 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 FRG1BP-201ENST00000278882 761 ntBASIC5.87□□□□□ -1.47
LIG3P49916 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 AL161781.1-201ENST00000354277 403 ntBASIC5.87□□□□□ -1.47
LIG3P49916 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
LIG3P49916 Y_RNA.159-201ENST00000363674 87 ntBASIC5.87□□□□□ -1.47
LIG3P49916 Y_RNA.535-201ENST00000384612 99 ntBASIC5.87□□□□□ -1.47
LIG3P49916 RPL11P3-201ENST00000395256 523 ntBASIC5.87□□□□□ -1.47
LIG3P49916 RPS3AP2-201ENST00000407190 754 ntBASIC5.87□□□□□ -1.47
LIG3P49916 RN7SKP29-201ENST00000410957 272 ntBASIC5.87□□□□□ -1.47
LIG3P49916 MRPL53P1-201ENST00000414323 319 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.87□□□□□ -1.47
LIG3P49916 AL353193.1-201ENST00000421444 268 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.87□□□□□ -1.47
LIG3P49916 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG3P49916 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.87□□□□□ -1.47
LIG3P49916 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG3P49916 AC023141.8-201ENST00000442554 208 ntBASIC5.87□□□□□ -1.47
LIG3P49916 RPL31P15-201ENST00000449770 338 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AC243772.1-201ENST00000451620 410 ntBASIC5.87□□□□□ -1.47
LIG3P49916 PRPF38AP1-201ENST00000451976 933 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AL445665.1-202ENST00000452436 324 ntBASIC5.87□□□□□ -1.47
LIG3P49916 SETP20-201ENST00000457046 852 ntBASIC5.87□□□□□ -1.47
LIG3P49916 RNU6-420P-201ENST00000458780 107 ntBASIC5.87□□□□□ -1.47
LIG3P49916 RPL36AP51-201ENST00000487216 318 ntBASIC5.87□□□□□ -1.47
LIG3P49916 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG3P49916 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.87□□□□□ -1.47
LIG3P49916 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG3P49916 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.87□□□□□ -1.47
LIG3P49916 SNORA70.20-201ENST00000516848 126 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms