Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 SNORA4.1-201ENST00000364263 144 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 RNA5SP455-201ENST00000365190 119 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA1P49639 SNORD116-9-201ENST00000384000 95 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 SNORD116-3-201ENST00000384287 95 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 SNORD116-7-201ENST00000384404 95 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 SNORD116-5-201ENST00000384462 95 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 ZSCAN12P1-201ENST00000406489 419 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 BTF3L4P1-201ENST00000413813 468 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 AF186996.5-201ENST00000418098 904 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA1P49639 SEPT2P1-201ENST00000419651 180 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 MTCO3P1-205ENST00000422088 832 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA1P49639 HLA-N-201ENST00000437516 135 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXA1P49639 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 AC000111.2-201ENST00000448200 210 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 AC092647.2-201ENST00000452998 253 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA1P49639 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA1P49639 RN7SL319P-201ENST00000480656 221 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 RN7SL101P-201ENST00000496350 279 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 OR2A20P-203ENST00000498397 1268 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXA1P49639 PGAM1P13-201ENST00000507497 754 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 XKRY-201ENST00000510392 1100 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 LTV1P1-201ENST00000510683 1237 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA1P49639 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA1P49639 MTND5P13-201ENST00000513046 1079 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC015795.1-201ENST00000513669 327 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 ATP5LP3-201ENST00000514223 304 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 RNA5SP43-201ENST00000516559 110 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA1P49639 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA1P49639 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXA1P49639 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 AL049839.1-201ENST00000556151 657 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXA1P49639 MTCYBP33-201ENST00000575007 1130 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXA1P49639 AC123786.2-201ENST00000603459 275 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AL592221.1-201ENST00000605266 382 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC005332.6-201ENST00000613178 446 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AL136981.2-201ENST00000617319 734 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 AC243756.2-201ENST00000618406 463 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 AL353662.3-201ENST00000625131 237 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 AC092192.1-201ENST00000633154 1018 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 AC107982.1-201ENST00000507171 1300 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.87□□□□□ -1.79
HOXA1P49639 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
HOXA1P49639 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXA1P49639 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA1P49639 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA1P49639 AC022031.1-201ENST00000585985 2593 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA1P49639 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA1P49639 AC105074.1-201ENST00000623380 3095 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA1P49639 RNA5SP322-201ENST00000363617 119 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 RNU6-621P-201ENST00000364752 109 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
HOXA1P49639 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA1P49639 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 SUGT1P1-201ENST00000379514 476 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 U3.25-201ENST00000391209 220 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 MIR921-201ENST00000401133 56 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 PIGPP2-201ENST00000411569 458 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA1P49639 RPL6P29-201ENST00000414863 865 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC009965.2-201ENST00000425328 970 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 B3GNT2P1-201ENST00000434960 952 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 MTCO2P16-201ENST00000436962 677 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 RPL34P20-201ENST00000442771 351 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AL034418.1-201ENST00000448675 860 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms