Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.2□□□□□ -1.9
VCANP13611 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
VCANP13611 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 RNA5SP42-201ENST00000364278 115 ntBASIC3.2□□□□□ -1.9
VCANP13611 RPS4XP7-201ENST00000406274 780 ntBASIC3.2□□□□□ -1.9
VCANP13611 AC009414.1-201ENST00000427200 443 ntBASIC3.2□□□□□ -1.9
VCANP13611 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC3.2□□□□□ -1.9
VCANP13611 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.2□□□□□ -1.9
VCANP13611 AC084357.1-201ENST00000473404 255 ntBASIC3.2□□□□□ -1.9
VCANP13611 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.2□□□□□ -1.9
VCANP13611 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 AC091905.1-201ENST00000624400 311 ntBASIC3.2□□□□□ -1.9
VCANP13611 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
VCANP13611 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
VCANP13611 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 HDGFP1-201ENST00000405943 252 ntBASIC3.2□□□□□ -1.9
VCANP13611 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.2□□□□□ -1.9
VCANP13611 RN7SKP210-201ENST00000459176 261 ntBASIC3.2□□□□□ -1.9
VCANP13611 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.2□□□□□ -1.9
VCANP13611 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 AC024153.1-201ENST00000603103 365 ntBASIC3.2□□□□□ -1.9
VCANP13611 AC096947.1-201ENST00000603233 470 ntBASIC3.2□□□□□ -1.9
VCANP13611 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.2□□□□□ -1.9
VCANP13611 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.2□□□□□ -1.9
VCANP13611 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VCANP13611 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VCANP13611 HMGB3P20-201ENST00000417997 600 ntBASIC3.19□□□□□ -1.9
VCANP13611 HIGD1AP12-201ENST00000427832 281 ntBASIC3.19□□□□□ -1.9
VCANP13611 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VCANP13611 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.19□□□□□ -1.9
VCANP13611 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 AC004972.1-201ENST00000623934 2209 ntBASIC3.19□□□□□ -1.9
VCANP13611 NMD3P1-201ENST00000439704 1488 ntBASIC3.19□□□□□ -1.9
VCANP13611 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
VCANP13611 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VCANP13611 UQCRHP3-201ENST00000451503 251 ntBASIC3.19□□□□□ -1.9
VCANP13611 AL442163.2-201ENST00000553912 710 ntBASIC3.19□□□□□ -1.9
VCANP13611 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.19□□□□□ -1.9
VCANP13611 BRDTP1-201ENST00000605735 677 ntBASIC3.19□□□□□ -1.9
VCANP13611 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 MIR8070-201ENST00000616510 88 ntBASIC3.19□□□□□ -1.9
VCANP13611 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VCANP13611 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 AC092435.3-201ENST00000565538 3654 ntBASIC3.19□□□□□ -1.9
VCANP13611 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
VCANP13611 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
VCANP13611 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.18□□□□□ -1.9
VCANP13611 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.18□□□□□ -1.9
VCANP13611 MRPS35P3-201ENST00000603189 709 ntBASIC3.18□□□□□ -1.9
VCANP13611 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.18□□□□□ -1.9
VCANP13611 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.18□□□□□ -1.9
VCANP13611 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 AC055855.1-201ENST00000489563 579 ntBASIC3.18□□□□□ -1.9
VCANP13611 USP9YP2-201ENST00000504503 1000 ntBASIC3.18□□□□□ -1.9
VCANP13611 USP9YP1-201ENST00000513521 1002 ntBASIC3.18□□□□□ -1.9
VCANP13611 AP002770.2-201ENST00000543613 532 ntBASIC3.18□□□□□ -1.9
VCANP13611 AC123768.4-201ENST00000616244 701 ntBASIC3.18□□□□□ -1.9
VCANP13611 PISRT1-201ENST00000626175 531 ntBASIC3.18□□□□□ -1.9
VCANP13611 MIR622-201ENST00000638396 96 ntBASIC3.18□□□□□ -1.9
VCANP13611 OR4G2P-202ENST00000641004 1759 ntBASIC3.18□□□□□ -1.9
VCANP13611 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VCANP13611 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.18□□□□□ -1.9
VCANP13611 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
VCANP13611 MAPK10-362ENST00000641864 4484 ntBASIC3.18□□□□□ -1.9
VCANP13611 MAPK10-322ENST00000641485 4530 ntBASIC3.18□□□□□ -1.9
VCANP13611 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VCANP13611 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VCANP13611 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VCANP13611 AC017002.4-201ENST00000604721 1525 ntBASIC3.18□□□□□ -1.9
VCANP13611 RNU1-108P-201ENST00000362556 161 ntBASIC3.18□□□□□ -1.9
VCANP13611 Y_RNA.140-201ENST00000363474 103 ntBASIC3.18□□□□□ -1.9
VCANP13611 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 SNRPGP5-201ENST00000456003 220 ntBASIC3.18□□□□□ -1.9
VCANP13611 APOOP4-201ENST00000513530 597 ntBASIC3.18□□□□□ -1.9
VCANP13611 Y_RNA.670-201ENST00000516255 105 ntBASIC3.18□□□□□ -1.9
VCANP13611 DUXAP6-201ENST00000553858 601 ntBASIC3.18□□□□□ -1.9
VCANP13611 uc_338.25-201ENST00000613756 156 ntBASIC3.18□□□□□ -1.9
VCANP13611 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.18□□□□□ -1.9
VCANP13611 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.17□□□□□ -1.9
VCANP13611 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.17□□□□□ -1.9
VCANP13611 RNA5SP68-201ENST00000363885 119 ntBASIC3.17□□□□□ -1.9
VCANP13611 MTND4P22-201ENST00000413116 1169 ntBASIC3.17□□□□□ -1.9
VCANP13611 AC016696.1-201ENST00000446949 318 ntBASIC3.17□□□□□ -1.9
VCANP13611 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VCANP13611 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.17□□□□□ -1.9
VCANP13611 AC020914.4-201ENST00000597690 277 ntBASIC3.17□□□□□ -1.9
VCANP13611 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
VCANP13611 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms