Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 PTER-203ENST00000423462 3212 ntTSL 3 BASIC10.47□□□□□ -0.73
MSH5O43196 MBP-206ENST00000397863 4800 ntTSL 3 BASIC10.47□□□□□ -0.73
MSH5O43196 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC10.47□□□□□ -0.73
MSH5O43196 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 U8.1-201ENST00000362843 134 ntBASIC10.47□□□□□ -0.73
MSH5O43196 SNORA20B-201ENST00000384220 132 ntBASIC10.47□□□□□ -0.73
MSH5O43196 SNORD12C-201ENST00000386307 89 ntBASIC10.47□□□□□ -0.73
MSH5O43196 RNU6-607P-201ENST00000411283 108 ntBASIC10.47□□□□□ -0.73
MSH5O43196 MLLT10P1-201ENST00000418346 262 ntBASIC10.47□□□□□ -0.73
MSH5O43196 FDPSP6-201ENST00000425091 512 ntBASIC10.47□□□□□ -0.73
MSH5O43196 RPL12P4-201ENST00000432629 497 ntBASIC10.47□□□□□ -0.73
MSH5O43196 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC10.47□□□□□ -0.73
MSH5O43196 GAPDHP37-201ENST00000442317 968 ntBASIC10.47□□□□□ -0.73
MSH5O43196 RPL12P32-201ENST00000484010 494 ntBASIC10.47□□□□□ -0.73
MSH5O43196 AC117383.2-201ENST00000514722 322 ntBASIC10.47□□□□□ -0.73
MSH5O43196 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 AC122685.1-202ENST00000556750 555 ntTSL 2 BASIC10.47□□□□□ -0.73
MSH5O43196 AL391261.3-201ENST00000557194 520 ntBASIC10.47□□□□□ -0.73
MSH5O43196 AC023968.1-201ENST00000560719 475 ntBASIC10.47□□□□□ -0.73
MSH5O43196 AC133485.3-201ENST00000562604 262 ntTSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 AC138907.3-201ENST00000563937 262 ntTSL 3 BASIC10.47□□□□□ -0.73
MSH5O43196 AC138869.2-201ENST00000569850 262 ntTSL 3 BASIC10.47□□□□□ -0.73
MSH5O43196 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC10.47□□□□□ -0.73
MSH5O43196 AC010680.2-201ENST00000603521 2117 ntBASIC10.47□□□□□ -0.73
MSH5O43196 AC008814.1-201ENST00000603797 406 ntBASIC10.47□□□□□ -0.73
MSH5O43196 MIR8075-201ENST00000614354 80 ntBASIC10.47□□□□□ -0.73
MSH5O43196 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC10.47□□□□□ -0.73
MSH5O43196 AC087893.2-201ENST00000623272 255 ntBASIC10.47□□□□□ -0.73
MSH5O43196 DAZ3-201ENST00000315357 3277 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 DAZ2-201ENST00000382294 3277 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 DAZ4-204ENST00000415508 3277 ntTSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 CORIN-205ENST00000504584 2417 ntTSL 2 BASIC10.47□□□□□ -0.73
MSH5O43196 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 XAF1-202ENST00000361842 3623 ntAPPRIS P4 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC10.47□□□□□ -0.73
MSH5O43196 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
MSH5O43196 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
MSH5O43196 LY75-CD302-202ENST00000505052 5482 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
MSH5O43196 PECAM1-203ENST00000563924 6831 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC10.47□□□□□ -0.73
MSH5O43196 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC10.47□□□□□ -0.73
MSH5O43196 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
MSH5O43196 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC10.46□□□□□ -0.73
MSH5O43196 SAMD8-201ENST00000372687 6935 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
MSH5O43196 Y_RNA.107-201ENST00000363190 121 ntBASIC10.46□□□□□ -0.73
MSH5O43196 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC10.46□□□□□ -0.73
MSH5O43196 NDUFS5P4-201ENST00000412983 318 ntBASIC10.46□□□□□ -0.73
MSH5O43196 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC10.46□□□□□ -0.73
MSH5O43196 AC108039.2-201ENST00000440214 359 ntBASIC10.46□□□□□ -0.73
MSH5O43196 AL451074.4-201ENST00000447545 470 ntBASIC10.46□□□□□ -0.73
MSH5O43196 AL360271.2-201ENST00000447710 161 ntBASIC10.46□□□□□ -0.73
MSH5O43196 AC092634.4-203ENST00000451395 448 ntBASIC10.46□□□□□ -0.73
MSH5O43196 U8.19-201ENST00000459095 133 ntBASIC10.46□□□□□ -0.73
MSH5O43196 RPS3P7-201ENST00000488662 726 ntBASIC10.46□□□□□ -0.73
MSH5O43196 PAQR9-AS1-202ENST00000493825 576 ntTSL 2 BASIC10.46□□□□□ -0.73
MSH5O43196 RNU6-677P-201ENST00000516914 101 ntBASIC10.46□□□□□ -0.73
MSH5O43196 AP003032.1-201ENST00000526730 277 ntTSL 3 BASIC10.46□□□□□ -0.73
MSH5O43196 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC10.46□□□□□ -0.73
MSH5O43196 UBE2Q2P11-201ENST00000559691 205 ntBASIC10.46□□□□□ -0.73
MSH5O43196 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC10.46□□□□□ -0.73
MSH5O43196 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.74
MSH5O43196 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
MSH5O43196 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
MSH5O43196 SUPT20H-205ENST00000464744 2625 ntAPPRIS P3 TSL 2 BASIC10.46□□□□□ -0.74
MSH5O43196 SLC4A4-203ENST00000351898 3771 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
MSH5O43196 COL12A1-211ENST00000615798 11579 ntTSL 5 BASIC10.46□□□□□ -0.74
MSH5O43196 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.74
MSH5O43196 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC10.46□□□□□ -0.74
MSH5O43196 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC10.46□□□□□ -0.74
MSH5O43196 AC107398.3-201ENST00000562284 7000 ntBASIC10.46□□□□□ -0.74
MSH5O43196 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
MSH5O43196 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
MSH5O43196 OR1D2-202ENST00000641064 4882 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
MSH5O43196 AC016583.1-201ENST00000624221 2431 ntBASIC10.45□□□□□ -0.74
MSH5O43196 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC10.45□□□□□ -0.74
MSH5O43196 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
MSH5O43196 MIRLET7F2-201ENST00000385277 83 ntBASIC10.45□□□□□ -0.74
MSH5O43196 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC10.45□□□□□ -0.74
MSH5O43196 AL354983.1-201ENST00000434580 906 ntBASIC10.45□□□□□ -0.74
MSH5O43196 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC10.45□□□□□ -0.74
MSH5O43196 RPS29P5-201ENST00000452777 171 ntBASIC10.45□□□□□ -0.74
MSH5O43196 AL356981.1-201ENST00000454879 684 ntBASIC10.45□□□□□ -0.74
MSH5O43196 snoU13.30-201ENST00000458951 104 ntBASIC10.45□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms