Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSH4O15457 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSH4O15457 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.98□□□□□ -1.77
MSH4O15457 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH4O15457 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.97□□□□□ -1.77
MSH4O15457 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH4O15457 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
MSH4O15457 ZNF90P1-201ENST00000480493 1951 ntBASIC3.97□□□□□ -1.77
MSH4O15457 MIR142-201ENST00000384835 87 ntBASIC3.97□□□□□ -1.77
MSH4O15457 MIR490-201ENST00000384865 128 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.97□□□□□ -1.77
MSH4O15457 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.97□□□□□ -1.77
MSH4O15457 AC068533.1-201ENST00000418542 415 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH4O15457 ARL2BPP3-201ENST00000421226 480 ntBASIC3.97□□□□□ -1.77
MSH4O15457 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
MSH4O15457 AC006989.1-201ENST00000427212 131 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL050321.1-201ENST00000432363 400 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL035458.1-201ENST00000433096 585 ntBASIC3.97□□□□□ -1.77
MSH4O15457 RPL21P110-201ENST00000433345 446 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL513321.1-201ENST00000441175 761 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH4O15457 MTCO3P20-201ENST00000454926 688 ntBASIC3.97□□□□□ -1.77
MSH4O15457 RPL7L1P8-201ENST00000469911 741 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AC025518.1-201ENST00000479856 347 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH4O15457 SNORD116-26-201ENST00000516006 96 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH4O15457 AP002812.4-201ENST00000532139 286 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AC107016.1-201ENST00000550463 337 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH4O15457 AL121576.1-201ENST00000556055 276 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH4O15457 AC135178.6-201ENST00000605314 398 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AC092354.2-201ENST00000607786 514 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC3.97□□□□□ -1.77
MSH4O15457 AL391261.4-201ENST00000616012 481 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL359715.5-201ENST00000623431 443 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AC024023.1-201ENST00000624530 922 ntBASIC3.97□□□□□ -1.77
MSH4O15457 AL163152.1-201ENST00000642001 374 ntBASIC3.97□□□□□ -1.77
MSH4O15457 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH4O15457 OTUD4P1-201ENST00000237841 3067 ntBASIC3.97□□□□□ -1.77
MSH4O15457 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.97□□□□□ -1.77
MSH4O15457 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.96□□□□□ -1.77
MSH4O15457 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH4O15457 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
MSH4O15457 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH4O15457 RNU6-984P-201ENST00000363236 109 ntBASIC3.96□□□□□ -1.78
MSH4O15457 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 MIR183-201ENST00000384958 110 ntBASIC3.96□□□□□ -1.78
MSH4O15457 HSPD1P16-201ENST00000402302 394 ntBASIC3.96□□□□□ -1.78
MSH4O15457 UBE2V1P15-201ENST00000407776 448 ntBASIC3.96□□□□□ -1.78
MSH4O15457 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH4O15457 YME1L1P1-201ENST00000429435 297 ntBASIC3.96□□□□□ -1.78
MSH4O15457 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH4O15457 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH4O15457 MTND2P8-201ENST00000450555 1025 ntBASIC3.96□□□□□ -1.78
MSH4O15457 TPMTP4-201ENST00000450749 678 ntBASIC3.96□□□□□ -1.78
MSH4O15457 IFNWP4-201ENST00000453148 294 ntBASIC3.96□□□□□ -1.78
MSH4O15457 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 RN7SL594P-201ENST00000470590 287 ntBASIC3.96□□□□□ -1.78
MSH4O15457 AC104687.1-201ENST00000485829 412 ntBASIC3.96□□□□□ -1.78
MSH4O15457 RPS3AP50-201ENST00000487064 803 ntBASIC3.96□□□□□ -1.78
MSH4O15457 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.96□□□□□ -1.78
MSH4O15457 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.96□□□□□ -1.78
MSH4O15457 AC103833.1-201ENST00000517442 172 ntBASIC3.96□□□□□ -1.78
MSH4O15457 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC3.96□□□□□ -1.78
MSH4O15457 AC093014.1-201ENST00000548926 724 ntBASIC3.96□□□□□ -1.78
MSH4O15457 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH4O15457 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH4O15457 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.96□□□□□ -1.78
MSH4O15457 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 AC233266.2-201ENST00000567067 528 ntBASIC3.96□□□□□ -1.78
MSH4O15457 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 MIR4716-201ENST00000579628 84 ntBASIC3.96□□□□□ -1.78
MSH4O15457 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.96□□□□□ -1.78
MSH4O15457 CCDC58P3-201ENST00000590792 430 ntBASIC3.96□□□□□ -1.78
MSH4O15457 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 AL450270.1-201ENST00000606160 391 ntBASIC3.96□□□□□ -1.78
MSH4O15457 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH4O15457 MIR7851-201ENST00000610611 160 ntBASIC3.96□□□□□ -1.78
MSH4O15457 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSH4O15457 AC123768.4-201ENST00000616244 701 ntBASIC3.96□□□□□ -1.78
MSH4O15457 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSH4O15457 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH4O15457 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH4O15457 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH4O15457 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
MSH4O15457 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
MSH4O15457 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH4O15457 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH4O15457 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSH4O15457 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.95□□□□□ -1.78
MSH4O15457 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSH4O15457 RNU4-35P-201ENST00000362588 141 ntBASIC3.95□□□□□ -1.78
MSH4O15457 SNORD17-201ENST00000390930 237 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms