Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC008745.1-201ENST00000604064 271 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC021749.1-201ENST00000604322 607 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC025588.2-201ENST00000604851 466 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC105227.2-201ENST00000615075 605 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC021755.4-201ENST00000616620 456 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL023881.1-201ENST00000621088 301 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC124312.6-202ENST00000623624 418 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL356121.2-201ENST00000624715 780 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 IQCB2P-201ENST00000401788 1633 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 MAPK10-253ENST00000641010 4072 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC008033.1-201ENST00000216407 1162 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 HMGB1P5-201ENST00000255320 642 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 RNU1-130P-201ENST00000363930 160 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL161909.1-201ENST00000397390 712 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 HSPD1P16-201ENST00000402302 394 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL139098.1-201ENST00000407291 389 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 SNORA74C-2-201ENST00000411179 201 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 FAR2P2-201ENST00000413041 594 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL008987.1-201ENST00000415528 237 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 VPS26BP1-201ENST00000417155 755 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC005005.2-201ENST00000420779 380 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 FAR2P4-202ENST00000425399 584 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC092447.3-201ENST00000426027 686 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 RPP40P1-201ENST00000426762 456 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 CNOT7P1-201ENST00000429006 852 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 RPL36P19-201ENST00000430744 301 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 COX7BP2-201ENST00000437976 242 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 RPL21P126-201ENST00000470049 478 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AK3P4-201ENST00000504283 583 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 MTATP6P22-201ENST00000507369 598 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 PRELID3BP5-201ENST00000508612 460 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 RNA5SP497-201ENST00000516081 97 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC017100.2-201ENST00000584628 355 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 VN1R78P-201ENST00000597393 564 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AL354984.3-201ENST00000604803 325 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AP000255.1-201ENST00000610276 676 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC243756.2-201ENST00000618406 463 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 AC007546.1-201ENST00000619452 559 ntBASIC3.76□□□□□ -1.81
NKX3-1Q99801 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-1Q99801 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-1Q99801 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms