Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR4700-201ENST00000578311 74 ntBASIC3.64□□□□□ -1.83
CCDC42Q96M95 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC42Q96M95 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC42Q96M95 AC007687.1-201ENST00000602704 304 ntBASIC3.64□□□□□ -1.83
CCDC42Q96M95 AC084373.1-201ENST00000603311 235 ntBASIC3.64□□□□□ -1.83
CCDC42Q96M95 AC099778.2-201ENST00000610904 211 ntBASIC3.64□□□□□ -1.83
CCDC42Q96M95 AC073476.4-201ENST00000628409 72 ntBASIC3.64□□□□□ -1.83
CCDC42Q96M95 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.64□□□□□ -1.83
CCDC42Q96M95 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC42Q96M95 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC42Q96M95 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC42Q96M95 SNORD56.3-201ENST00000363507 71 ntBASIC3.63□□□□□ -1.83
CCDC42Q96M95 RNU6-167P-201ENST00000384292 106 ntBASIC3.63□□□□□ -1.83
CCDC42Q96M95 METTL5-204ENST00000409340 472 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 AP001960.1-201ENST00000506494 658 ntBASIC3.63□□□□□ -1.83
CCDC42Q96M95 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC42Q96M95 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 AC009948.4-201ENST00000604692 675 ntBASIC3.63□□□□□ -1.83
CCDC42Q96M95 AL451086.1-201ENST00000605596 223 ntBASIC3.63□□□□□ -1.83
CCDC42Q96M95 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC42Q96M95 MIR378J-201ENST00000611988 109 ntBASIC3.63□□□□□ -1.83
CCDC42Q96M95 AF127577.6-201ENST00000623352 2191 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC42Q96M95 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC42Q96M95 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC42Q96M95 RPL7P26-201ENST00000333817 754 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.62□□□□□ -1.83
CCDC42Q96M95 RNA5SP293-201ENST00000410527 113 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC42Q96M95 ETF1P3-201ENST00000430422 1160 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC42Q96M95 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC42Q96M95 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.62□□□□□ -1.83
CCDC42Q96M95 AC021146.5-201ENST00000503544 545 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 AC112198.1-201ENST00000505369 1220 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 RN7SKP18-201ENST00000516005 275 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 AC022790.1-201ENST00000522872 204 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 OR4R3P-201ENST00000525084 838 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC42Q96M95 AC067852.4-201ENST00000590314 478 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC42Q96M95 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.62□□□□□ -1.83
CCDC42Q96M95 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC42Q96M95 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC004972.1-201ENST00000623934 2209 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC42Q96M95 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 B3GNT2P1-201ENST00000434960 952 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 RPL23AP22-201ENST00000437556 453 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 RPS15AP29-201ENST00000445539 400 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC007688.1-201ENST00000475592 759 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC023050.1-201ENST00000498198 304 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 KCTD9P5-201ENST00000504141 1170 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 RN7SKP116-201ENST00000516902 319 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 IGHV3-76-201ENST00000522465 295 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC015917.1-201ENST00000579654 510 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 AP001180.3-201ENST00000582221 145 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC42Q96M95 AC012213.4-201ENST00000606457 354 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 AL133383.2-201ENST00000622958 2336 ntBASIC3.61□□□□□ -1.83
CCDC42Q96M95 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC42Q96M95 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC42Q96M95 CR383658.2-201ENST00000547576 1525 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AC025125.1-201ENST00000624743 1922 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC42Q96M95 RNA5SP197-201ENST00000363357 119 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 U3.11-201ENST00000364476 212 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 RN7SKP111-201ENST00000410349 271 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 RNA5SP44-201ENST00000410446 133 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AC012065.2-201ENST00000421295 375 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 CYCSP4-201ENST00000429682 331 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AC073387.1-201ENST00000453261 709 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AC114967.1-201ENST00000504890 259 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms