Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC5.43□□□□□ -1.54
RNF4P78317 AL592293.2-201ENST00000422292 996 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC113412.1-201ENST00000425840 504 ntBASIC5.43□□□□□ -1.54
RNF4P78317 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.43□□□□□ -1.54
RNF4P78317 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 RPS29P14-201ENST00000431518 171 ntBASIC5.43□□□□□ -1.54
RNF4P78317 ATP5JP1-201ENST00000431631 322 ntBASIC5.43□□□□□ -1.54
RNF4P78317 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 AC006335.2-201ENST00000437993 330 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL049734.2-201ENST00000441066 616 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 TCEA1P1-201ENST00000449716 880 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 RPS27AP17-201ENST00000463344 455 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL136126.1-201ENST00000473603 402 ntBASIC5.43□□□□□ -1.54
RNF4P78317 RPL7P39-201ENST00000481157 744 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC233702.1-201ENST00000482905 502 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC093267.1-201ENST00000489176 961 ntBASIC5.43□□□□□ -1.54
RNF4P78317 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 PCBP2P3-201ENST00000509726 843 ntBASIC5.43□□□□□ -1.54
RNF4P78317 MIR2117-201ENST00000516780 80 ntBASIC5.43□□□□□ -1.54
RNF4P78317 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.43□□□□□ -1.54
RNF4P78317 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 HMGN2P36-201ENST00000529541 409 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.43□□□□□ -1.54
RNF4P78317 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 AC079600.1-201ENST00000550326 297 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL442663.2-201ENST00000554385 511 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 AL353997.4-201ENST00000586196 166 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 AC006272.2-201ENST00000594725 163 ntBASIC5.43□□□□□ -1.54
RNF4P78317 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 AC243960.4-201ENST00000600532 288 ntBASIC5.43□□□□□ -1.54
RNF4P78317 PSMA6P4-201ENST00000603247 718 ntBASIC5.43□□□□□ -1.54
RNF4P78317 YWHAQP7-201ENST00000603536 658 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC069234.4-201ENST00000621276 412 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL160413.1-201ENST00000622780 310 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL356585.4-201ENST00000623078 1229 ntBASIC5.43□□□□□ -1.54
RNF4P78317 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 AL645937.1-201ENST00000641739 1652 ntBASIC5.43□□□□□ -1.54
RNF4P78317 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.43□□□□□ -1.54
RNF4P78317 AC133552.1-201ENST00000569988 4007 ntBASIC5.43□□□□□ -1.54
RNF4P78317 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 AC114546.3-201ENST00000623582 1734 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.43□□□□□ -1.54
RNF4P78317 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
RNF4P78317 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.42□□□□□ -1.54
RNF4P78317 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
RNF4P78317 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
RNF4P78317 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
RNF4P78317 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
RNF4P78317 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
RNF4P78317 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 AC025470.1-201ENST00000510053 2032 ntBASIC5.42□□□□□ -1.54
RNF4P78317 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 Y_RNA.166-201ENST00000363730 102 ntBASIC5.42□□□□□ -1.54
RNF4P78317 RNU6-1227P-201ENST00000383981 107 ntBASIC5.42□□□□□ -1.54
RNF4P78317 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
RNF4P78317 RPL23AP17-201ENST00000401064 499 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AL162578.1-201ENST00000406202 378 ntBASIC5.42□□□□□ -1.54
RNF4P78317 RNU6-373P-201ENST00000411247 98 ntBASIC5.42□□□□□ -1.54
RNF4P78317 MRPL53P1-201ENST00000414323 319 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.42□□□□□ -1.54
RNF4P78317 VTI1BP4-201ENST00000427516 527 ntBASIC5.42□□□□□ -1.54
RNF4P78317 OR2B7P-201ENST00000429302 934 ntBASIC5.42□□□□□ -1.54
RNF4P78317 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
RNF4P78317 AL365400.1-201ENST00000431854 640 ntBASIC5.42□□□□□ -1.54
RNF4P78317 RPL36AP53-201ENST00000432891 316 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AL627308.1-201ENST00000435693 821 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AC073109.1-201ENST00000445066 978 ntBASIC5.42□□□□□ -1.54
RNF4P78317 RPL7P12-201ENST00000446719 750 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms