Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COPB1P53618 RNF6P1-201ENST00000444889 1784 ntBASIC4.84□□□□□ -1.63
COPB1P53618 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COPB1P53618 DCAF13P3-201ENST00000561147 1334 ntBASIC4.84□□□□□ -1.63
COPB1P53618 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COPB1P53618 RNA5SP87-201ENST00000384155 118 ntBASIC4.84□□□□□ -1.63
COPB1P53618 RNU6-1200P-201ENST00000384162 107 ntBASIC4.84□□□□□ -1.63
COPB1P53618 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.84□□□□□ -1.63
COPB1P53618 MIR1911-201ENST00000410783 80 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AL590139.1-201ENST00000416267 400 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC019050.1-201ENST00000418508 492 ntBASIC4.84□□□□□ -1.63
COPB1P53618 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC4.84□□□□□ -1.63
COPB1P53618 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.84□□□□□ -1.63
COPB1P53618 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.84□□□□□ -1.63
COPB1P53618 AC022022.1-201ENST00000430304 178 ntBASIC4.84□□□□□ -1.63
COPB1P53618 PRELID3BP10-201ENST00000431957 584 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.84□□□□□ -1.63
COPB1P53618 MTCO2P16-201ENST00000436962 677 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 AC092809.1-201ENST00000441469 474 ntBASIC4.84□□□□□ -1.63
COPB1P53618 TAF9P1-201ENST00000445421 515 ntBASIC4.84□□□□□ -1.63
COPB1P53618 MTCO2P25-201ENST00000447065 681 ntBASIC4.84□□□□□ -1.63
COPB1P53618 ABCF2P2-201ENST00000450549 296 ntBASIC4.84□□□□□ -1.63
COPB1P53618 TAF9P2-201ENST00000454958 515 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.84□□□□□ -1.63
COPB1P53618 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.84□□□□□ -1.63
COPB1P53618 FTH1P2-201ENST00000466086 412 ntBASIC4.84□□□□□ -1.63
COPB1P53618 RPL30P6-201ENST00000475925 342 ntBASIC4.84□□□□□ -1.63
COPB1P53618 DYNLL1P6-201ENST00000503440 264 ntBASIC4.84□□□□□ -1.63
COPB1P53618 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 AC112198.1-201ENST00000505369 1220 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COPB1P53618 HSPE1P23-201ENST00000509838 286 ntBASIC4.84□□□□□ -1.63
COPB1P53618 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.84□□□□□ -1.63
COPB1P53618 MTND5P13-201ENST00000513046 1079 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.84□□□□□ -1.63
COPB1P53618 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.84□□□□□ -1.63
COPB1P53618 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.84□□□□□ -1.63
COPB1P53618 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC4.84□□□□□ -1.63
COPB1P53618 NPM1P47-201ENST00000560843 856 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC018552.1-201ENST00000562099 811 ntBASIC4.84□□□□□ -1.63
COPB1P53618 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC4.84□□□□□ -1.63
COPB1P53618 AP000811.1-201ENST00000603803 651 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AC064872.1-201ENST00000604823 1072 ntBASIC4.84□□□□□ -1.63
COPB1P53618 AL031666.3-201ENST00000609320 1006 ntBASIC4.84□□□□□ -1.63
COPB1P53618 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.84□□□□□ -1.63
COPB1P53618 FP325313.1-201ENST00000638228 703 ntBASIC4.84□□□□□ -1.63
COPB1P53618 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COPB1P53618 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COPB1P53618 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.84□□□□□ -1.63
COPB1P53618 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
COPB1P53618 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
COPB1P53618 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.83□□□□□ -1.64
COPB1P53618 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
COPB1P53618 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COPB1P53618 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.83□□□□□ -1.64
COPB1P53618 RLIMP2-201ENST00000427891 1563 ntBASIC4.83□□□□□ -1.64
COPB1P53618 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4.83□□□□□ -1.64
COPB1P53618 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.83□□□□□ -1.64
COPB1P53618 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COPB1P53618 RNU6-931P-201ENST00000363850 107 ntBASIC4.83□□□□□ -1.64
COPB1P53618 Y_RNA.408-201ENST00000383987 102 ntBASIC4.83□□□□□ -1.64
COPB1P53618 MIR217-201ENST00000384817 110 ntBASIC4.83□□□□□ -1.64
COPB1P53618 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COPB1P53618 OR51A3P-201ENST00000413596 924 ntBASIC4.83□□□□□ -1.64
COPB1P53618 MRPS36P1-201ENST00000421291 307 ntBASIC4.83□□□□□ -1.64
COPB1P53618 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.83□□□□□ -1.64
COPB1P53618 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC4.83□□□□□ -1.64
COPB1P53618 KCTD10P1-201ENST00000434203 625 ntBASIC4.83□□□□□ -1.64
COPB1P53618 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC4.83□□□□□ -1.64
COPB1P53618 AC011753.3-201ENST00000443436 406 ntBASIC4.83□□□□□ -1.64
COPB1P53618 COX6CP18-201ENST00000448769 222 ntBASIC4.83□□□□□ -1.64
COPB1P53618 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.83□□□□□ -1.64
COPB1P53618 AC006967.1-201ENST00000467608 589 ntBASIC4.83□□□□□ -1.64
COPB1P53618 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.83□□□□□ -1.64
COPB1P53618 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.83□□□□□ -1.64
COPB1P53618 AC005178.1-201ENST00000508392 440 ntBASIC4.83□□□□□ -1.64
COPB1P53618 AC010587.2-201ENST00000511727 448 ntBASIC4.83□□□□□ -1.64
COPB1P53618 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.83□□□□□ -1.64
COPB1P53618 AC087808.1-201ENST00000520501 361 ntBASIC4.83□□□□□ -1.64
COPB1P53618 PHBP17-201ENST00000528576 541 ntBASIC4.83□□□□□ -1.64
COPB1P53618 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COPB1P53618 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.83□□□□□ -1.64
COPB1P53618 AC007115.1-201ENST00000546853 234 ntBASIC4.83□□□□□ -1.64
COPB1P53618 CYP4A43P-201ENST00000568156 121 ntBASIC4.83□□□□□ -1.64
COPB1P53618 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.83□□□□□ -1.64
COPB1P53618 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.83□□□□□ -1.64
COPB1P53618 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.83□□□□□ -1.64
COPB1P53618 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.83□□□□□ -1.64
COPB1P53618 AC234771.5-201ENST00000600161 514 ntBASIC4.83□□□□□ -1.64
COPB1P53618 AL031985.2-201ENST00000600955 480 ntBASIC4.83□□□□□ -1.64
COPB1P53618 RPL26P30-202ENST00000602923 645 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms