Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL049697.2-201ENST00000403708 294 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 RNU6-77P-201ENST00000410554 91 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 RNU4-25P-201ENST00000410569 230 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 ATG4AP1-201ENST00000416893 538 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 AL138785.1-201ENST00000425821 331 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 AL031736.2-201ENST00000426573 787 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.59□□□□□ -1.51
COL6A1P12109 DYNLL1P7-201ENST00000429273 258 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 RPS25P9-201ENST00000435591 252 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 ARL5AP2-201ENST00000444698 533 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.59□□□□□ -1.51
COL6A1P12109 NOP56P2-201ENST00000447491 769 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 TCEA1P1-201ENST00000449716 880 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 RN7SL189P-201ENST00000468631 289 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.59□□□□□ -1.51
COL6A1P12109 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC5.59□□□□□ -1.51
COL6A1P12109 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.59□□□□□ -1.51
COL6A1P12109 ENPP7P9-201ENST00000514456 627 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 RN7SKP298-201ENST00000515950 94 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 RNU6-506P-201ENST00000516553 94 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 AC100784.1-201ENST00000522790 310 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.59□□□□□ -1.51
COL6A1P12109 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 TPRKBP2-201ENST00000565969 475 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 AC133552.5-201ENST00000604266 540 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 AC004067.1-201ENST00000608733 700 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.59□□□□□ -1.51
COL6A1P12109 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.59□□□□□ -1.51
COL6A1P12109 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 AC134882.1-201ENST00000603738 1676 ntBASIC5.59□□□□□ -1.52
COL6A1P12109 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.59□□□□□ -1.52
COL6A1P12109 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL6A1P12109 AC006210.2-201ENST00000367074 1545 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 AC104964.3-201ENST00000606115 2860 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A1P12109 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A1P12109 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 RN7SKP185-201ENST00000362813 326 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 RNU6-98P-201ENST00000384173 107 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL6A1P12109 RN7SKP106-201ENST00000410832 272 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A1P12109 AL121878.1-201ENST00000418638 859 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 RPL31P54-201ENST00000429803 370 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 CDY14P-201ENST00000431260 1014 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 MTND3P21-201ENST00000433774 331 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A1P12109 CDY23P-201ENST00000451661 1014 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 OR6C5P-201ENST00000452388 923 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 NIP7P2-201ENST00000485801 544 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A1P12109 AC097173.1-201ENST00000505862 819 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 COX6B1P6-201ENST00000522347 255 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 OR8A2P-201ENST00000528631 952 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 OR5M2P-201ENST00000529003 936 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 DEFB108A-201ENST00000530110 222 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.58□□□□□ -1.52
COL6A1P12109 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 OR7K1P-201ENST00000546439 926 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 AC009063.1-201ENST00000563342 702 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.58□□□□□ -1.52
COL6A1P12109 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A1P12109 BNIP3P22-201ENST00000593399 556 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A1P12109 BNIP3P33-201ENST00000598912 569 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 AC091965.4-201ENST00000607691 587 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 AL353726.1-201ENST00000614041 1000 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 AC131238.1-201ENST00000617135 328 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 MIR6853-201ENST00000619642 74 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 AL356321.1-201ENST00000621360 228 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 CDRT1-208ENST00000630868 794 ntBASIC5.58□□□□□ -1.52
COL6A1P12109 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.58□□□□□ -1.52
COL6A1P12109 U6.107-201ENST00000637108 79 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms