Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 XPOTP1-201ENST00000443317 2398 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 ZNF849P-201ENST00000594711 1566 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 OR4A15-201ENST00000314706 1035 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RNU6-984P-201ENST00000363236 109 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC025750.1-201ENST00000399891 379 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 PRRC2CP1-201ENST00000404428 159 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AL121834.1-202ENST00000404494 277 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AL445189.1-201ENST00000405722 338 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 SNORA3.3-201ENST00000408712 125 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RNA5SP104-201ENST00000410989 118 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 CYCSP19-201ENST00000411715 316 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AL160275.2-201ENST00000412010 394 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RPL36AP36-201ENST00000418616 301 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 OR4F13P-201ENST00000428478 931 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC004865.1-201ENST00000442276 1003 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 GXYLT1P1-201ENST00000446657 490 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AL359073.1-201ENST00000448036 403 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 BX248409.1-201ENST00000455497 255 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC084198.1-201ENST00000477747 402 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RN7SL132P-201ENST00000478131 296 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC092902.1-201ENST00000486999 259 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC113430.1-201ENST00000506872 718 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC090071.1-201ENST00000507713 644 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC008885.2-201ENST00000509506 930 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RAC1P2-201ENST00000511164 579 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RNU5A-7P-201ENST00000515979 116 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RNA5SP208-201ENST00000516156 78 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC022695.1-201ENST00000522089 237 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 SERPINE4P-201ENST00000554978 281 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC023824.3-201ENST00000569003 562 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AP002906.1-201ENST00000603405 233 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC091488.1-201ENST00000604239 660 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AC018926.1-201ENST00000616335 435 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 LINC02471-203ENST00000641941 4752 ntBASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
LHX3Q9UBR4 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 MIR448-201ENST00000362131 111 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RNU6-1279P-201ENST00000383917 103 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 MIR134-201ENST00000385258 73 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RPL22P22-201ENST00000395439 379 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 SOD2P1-201ENST00000396543 562 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 ZNF602P-201ENST00000405929 924 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RN7SKP156-201ENST00000410308 342 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC246680.2-201ENST00000422106 389 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC241520.1-201ENST00000422654 1099 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 NPM1P34-201ENST00000428821 893 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 HMGB3P5-201ENST00000428894 612 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AL445584.1-201ENST00000431451 330 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RPL21P110-201ENST00000433345 446 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC122718.1-201ENST00000439448 744 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC002542.1-201ENST00000440683 193 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RRM2P4-201ENST00000441721 562 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC005002.1-201ENST00000447458 540 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms