Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
TRIM39Q9HCM9 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
TRIM39Q9HCM9 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 OR4G2P-201ENST00000328113 903 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RNU1-130P-201ENST00000363930 160 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RNA5SP339-201ENST00000390987 122 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RNA5SP487-201ENST00000410186 122 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC079809.1-201ENST00000415468 276 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 MTATP6P27-201ENST00000416987 621 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 C1DP2-201ENST00000418167 426 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC004690.1-201ENST00000418216 328 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 OR8F1P-201ENST00000425243 930 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RPL12P46-201ENST00000436610 195 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RSU1P2-202ENST00000437884 485 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 NPM1P49-201ENST00000448027 714 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 MTCO1P42-201ENST00000457379 726 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RPS3AP17-201ENST00000472594 777 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC004924.1-201ENST00000480160 781 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RPS21P4-201ENST00000487122 248 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC093767.1-201ENST00000504523 156 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC024558.1-201ENST00000505008 528 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC022483.1-201ENST00000514020 567 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AP004607.2-201ENST00000533949 322 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 EEF1B2P4-201ENST00000551398 348 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AL133241.1-201ENST00000556832 487 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 RN7SL356P-201ENST00000582228 248 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AP000769.2-201ENST00000602344 396 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 SUMO2P15-201ENST00000604285 278 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 COX6CP4-201ENST00000605798 228 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC098614.4-201ENST00000607601 462 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC091304.9-201ENST00000612091 226 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AL512624.1-201ENST00000613638 469 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC109583.2-201ENST00000617367 129 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 OR5H6-203ENST00000642105 978 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 STX3-208ENST00000641815 3236 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 AC097714.1-201ENST00000511272 1647 ntBASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TRIM39Q9HCM9 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 FARSBP1-201ENST00000435808 1778 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 SMG1P6-201ENST00000532337 2930 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC114546.3-201ENST00000623582 1734 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AL138820.1-201ENST00000617901 5305 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC005294.1-201ENST00000355509 281 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 MIR181A1-201ENST00000385026 110 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 DBIP1-201ENST00000401435 260 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 PPIAP9-201ENST00000403866 498 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 MED28P3-201ENST00000444288 531 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 PLGLA-201ENST00000465668 449 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC013356.1-201ENST00000489027 564 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC023424.1-201ENST00000496058 459 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 SCARNA20.4-201ENST00000516969 131 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms