Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SEPT7P5-201ENST00000434048 306 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 MTND1P31-201ENST00000449206 961 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 NECAP1P2-201ENST00000455668 727 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 RPS15AP1-201ENST00000457423 391 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 NF1P3-201ENST00000457709 450 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 RPL35AP15-201ENST00000468042 339 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC011979.1-201ENST00000472300 483 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 F11-205ENST00000492972 1204 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 IFITM8P-201ENST00000522529 394 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 EIF5A2P1-201ENST00000564027 460 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 RPL23AP97-201ENST00000568955 471 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 ELOCP28-201ENST00000590044 317 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC245036.5-201ENST00000596330 847 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC007349.4-201ENST00000608114 532 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC107075.1-201ENST00000613695 314 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC026368.1-201ENST00000614934 690 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 MIR6780A-201ENST00000615089 68 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 MIR6891-201ENST00000618788 93 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 RNU6-156P-201ENST00000621869 107 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 OR6C71P-202ENST00000641886 1107 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 MFSD8-242ENST00000641690 4199 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC012020.1-201ENST00000624541 1728 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC079741.1-201ENST00000321498 212 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL590084.1-201ENST00000407885 387 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL161449.1-201ENST00000414531 1199 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 RPS23P10-201ENST00000416185 486 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 RPS24P7-201ENST00000416921 246 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL139095.3-201ENST00000419672 1203 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC007435.1-201ENST00000421086 415 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 RPL7AP25-201ENST00000423357 805 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 GTF2IP23-201ENST00000423746 351 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 RPL7P44-201ENST00000424827 742 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 MTCO1P54-201ENST00000430139 712 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 PPIAP17-201ENST00000438507 471 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC011753.3-201ENST00000443436 406 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL162388.1-201ENST00000450912 352 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 snoU13.1-201ENST00000459157 104 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 RNA5SP154-201ENST00000516193 111 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 RNA5SP135-201ENST00000517019 125 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 IGKV1-32-201ENST00000519290 311 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-1Q99801 CYP4A43P-201ENST00000568156 121 ntBASIC3.77□□□□□ -1.81
NKX3-1Q99801 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-1Q99801 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms