Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC126323.6-202ENST00000568092 3511 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 PHKBP1-201ENST00000450951 1951 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RPL21P132-201ENST00000331267 462 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RNU4-44P-201ENST00000363050 141 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP443-201ENST00000363083 132 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 U3.4-201ENST00000363352 213 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP88-201ENST00000365560 109 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RNU2-50P-201ENST00000410494 143 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC006366.1-201ENST00000422002 759 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RGS17P1-201ENST00000423358 553 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 CENPIP1-201ENST00000425713 902 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 IPMKP1-201ENST00000425988 855 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 VDAC1P6-201ENST00000430062 855 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RPL36AP33-201ENST00000450395 310 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 OR52J1P-201ENST00000450596 932 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RPL23AP56-201ENST00000460778 453 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AP000893.1-201ENST00000474462 794 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC091965.2-201ENST00000512324 613 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP464-201ENST00000516251 108 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 DEFB131D-201ENST00000526803 184 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 CR383656.6-201ENST00000550518 394 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AL049839.1-201ENST00000556151 657 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC136618.2-201ENST00000575091 400 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 SNORA74C-1-201ENST00000580726 201 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC080078.2-201ENST00000603766 501 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AP001521.2-201ENST00000608772 546 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AL121873.1-201ENST00000616013 524 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AC079228.1-201ENST00000624774 1049 ntBASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
PTCHD3Q3KNS1 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC092104.1-201ENST00000497346 1441 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC107081.3-201ENST00000612715 2034 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL121657.1-201ENST00000327215 531 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SNRPEP3-201ENST00000338402 276 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP191-201ENST00000362585 102 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RNU4-91P-201ENST00000364778 135 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SNORA56-201ENST00000383966 129 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP87-201ENST00000384155 118 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RNU6-192P-201ENST00000391253 100 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RPL26P29-201ENST00000415623 438 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC009302.1-201ENST00000417147 390 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL953862.1-201ENST00000423016 168 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 EIF4HP2-201ENST00000424380 563 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SDCBPP2-201ENST00000424643 885 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC073335.1-201ENST00000427776 363 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 USP9YP9-201ENST00000429406 715 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC093414.1-201ENST00000434712 514 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 MTND1P34-201ENST00000438556 671 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 TRIM60P18-201ENST00000441518 828 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms