Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.24□□□□□ -1.89
FOXA1P55317 AC006130.2-201ENST00000586202 326 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 AC009948.4-201ENST00000604692 675 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 AL365400.2-201ENST00000605604 902 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 U1.23-201ENST00000610293 146 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA1P55317 RNU1-68P-201ENST00000615382 146 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXA1P55317 U1.39-201ENST00000621562 146 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXA1P55317 AC009093.8-201ENST00000641769 292 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
FOXA1P55317 CR383658.2-201ENST00000547576 1525 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA1P55317 AC010329.2-201ENST00000595195 2737 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
FOXA1P55317 RPL7P26-201ENST00000333817 754 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 SNORD56.3-201ENST00000363507 71 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 RNU1-85P-201ENST00000364127 164 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA1P55317 AL359837.1-201ENST00000381357 287 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 MTND4LP13-201ENST00000425022 298 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 AL035246.1-201ENST00000433554 1255 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 RPS15AP29-201ENST00000445539 400 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA1P55317 AC106707.2-201ENST00000484182 374 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
FOXA1P55317 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 SNORA70.14-201ENST00000516205 110 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 SNORA64.4-201ENST00000516632 81 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA1P55317 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA1P55317 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXA1P55317 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXA1P55317 BMS1P7-201ENST00000602440 1052 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 GMCL1P2-201ENST00000605230 823 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 AC015802.5-201ENST00000607478 399 ntBASIC3.23□□□□□ -1.89
FOXA1P55317 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXA1P55317 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXA1P55317 AC100871.1-201ENST00000507871 1456 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA1P55317 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA1P55317 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 RNA5SP119-201ENST00000362715 117 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA1P55317 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA1P55317 AC099336.2-201ENST00000422457 254 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA1P55317 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA1P55317 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA1P55317 AC073063.1-201ENST00000434352 607 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXA1P55317 SNRPGP5-201ENST00000456003 220 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 RPL7P48-201ENST00000461513 746 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AP000926.1-201ENST00000479573 241 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA1P55317 AC147055.1-201ENST00000509261 750 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA1P55317 SNORA70.17-201ENST00000516449 133 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 RN7SKP116-201ENST00000516902 319 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXA1P55317 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
FOXA1P55317 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA1P55317 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXA1P55317 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
FOXA1P55317 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA1P55317 AP000919.1-202ENST00000581139 1264 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 BNIP3P33-201ENST00000598912 569 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC006557.5-201ENST00000603126 811 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC112230.1-201ENST00000604342 547 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC012213.4-201ENST00000606457 354 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 MIR7851-201ENST00000610611 160 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 AC034229.5-201ENST00000624258 185 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
FOXA1P55317 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXA1P55317 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA1P55317 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.22□□□□□ -1.89
FOXA1P55317 SRP72P2-201ENST00000344851 1979 ntBASIC3.21□□□□□ -1.89
FOXA1P55317 AL136964.1-201ENST00000622038 2990 ntBASIC3.21□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms