Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-704P-201ENST00000364162 103 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 Y_RNA.539-201ENST00000384635 107 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 Y_RNA.594-201ENST00000410373 140 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 E2F6P2-201ENST00000420708 748 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 ELOCP20-201ENST00000422460 345 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.72□□□□□ -1.49
COL8A1P27658 RPL7P2-201ENST00000427639 268 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AC236972.1-201ENST00000433225 199 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AC019185.1-201ENST00000442718 389 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.72□□□□□ -1.49
COL8A1P27658 CYCSP24-201ENST00000445119 316 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AC002381.1-201ENST00000447049 280 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.72□□□□□ -1.49
COL8A1P27658 AL118520.1-201ENST00000450770 291 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AL445687.2-201ENST00000458156 728 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 RPL23AP41-201ENST00000484754 458 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AC066616.1-201ENST00000486795 413 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.72□□□□□ -1.49
COL8A1P27658 AC055733.3-201ENST00000505214 523 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.72□□□□□ -1.49
COL8A1P27658 AC027801.3-201ENST00000515049 698 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 SCARNA6.1-201ENST00000516989 238 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 IGLV2-28-201ENST00000520681 304 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AP005639.1-201ENST00000526939 192 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.72□□□□□ -1.49
COL8A1P27658 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC5.72□□□□□ -1.49
COL8A1P27658 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.72□□□□□ -1.49
COL8A1P27658 MIR4703-201ENST00000577728 79 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 MIR3146-201ENST00000580367 79 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC5.72□□□□□ -1.49
COL8A1P27658 AL022323.4-201ENST00000623980 13120 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL8A1P27658 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC5.72□□□□□ -1.49
COL8A1P27658 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL8A1P27658 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
COL8A1P27658 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL8A1P27658 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL8A1P27658 TMC3-AS1-206ENST00000612811 2726 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
COL8A1P27658 LCOR-201ENST00000286067 4542 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL8A1P27658 SFTPD-AS1-201ENST00000608229 5001 ntBASIC5.72□□□□□ -1.49
COL8A1P27658 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL8A1P27658 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.72□□□□□ -1.49
COL8A1P27658 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL8A1P27658 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL8A1P27658 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
COL8A1P27658 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL8A1P27658 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL8A1P27658 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL8A1P27658 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL8A1P27658 RNU6-212P-201ENST00000362642 104 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 SNORA62.1-201ENST00000364287 154 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 MIR105-2-201ENST00000385083 81 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
COL8A1P27658 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC5.71□□□□□ -1.5
COL8A1P27658 RPL21P50-201ENST00000417698 477 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 AL353662.1-201ENST00000439099 327 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.71□□□□□ -1.5
COL8A1P27658 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 AC073909.1-201ENST00000447112 999 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 AC004801.2-202ENST00000463559 283 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.71□□□□□ -1.5
COL8A1P27658 AL136038.1-201ENST00000497246 351 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 TMEM251P1-201ENST00000503717 318 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AC022447.4-201ENST00000504053 364 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.71□□□□□ -1.5
COL8A1P27658 AP003497.1-201ENST00000528472 562 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 PMS2P3-207ENST00000529061 717 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AC036111.2-201ENST00000533247 901 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 AC013283.1-201ENST00000557282 492 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms