Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD4P09016 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD4P09016 ZNF29P-201ENST00000225587 168 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD4P09016 SNORA62.3-201ENST00000365110 153 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 RNU6-452P-201ENST00000384406 107 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 RNU1-44P-201ENST00000384453 163 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 MTCO3P4-201ENST00000419236 787 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD4P09016 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC000041.1-201ENST00000439655 175 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 EXTL2P1-201ENST00000446218 416 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC008280.2-201ENST00000455473 307 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AC079804.1-201ENST00000461922 436 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 RPL35AP15-201ENST00000468042 339 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
HOXD4P09016 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
HOXD4P09016 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD4P09016 AC026407.1-201ENST00000518369 204 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD4P09016 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD4P09016 MTATP6P24-201ENST00000576835 677 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 MIR4789-201ENST00000577469 82 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD4P09016 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 AC079610.2-201ENST00000604818 690 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AC090525.3-201ENST00000605601 189 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AC011374.2-201ENST00000607135 526 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 RNU4-89P-201ENST00000607443 133 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AC055764.2-201ENST00000610089 670 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 MIR6867-201ENST00000610636 67 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AC024023.1-201ENST00000624530 922 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXD4P09016 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXD4P09016 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXD4P09016 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXD4P09016 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD4P09016 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 ZNF962P-201ENST00000443465 3140 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 AC106871.1-201ENST00000568324 3102 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD4P09016 AL592437.2-201ENST00000421655 2434 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD4P09016 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD4P09016 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD4P09016 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD4P09016 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD4P09016 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD4P09016 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD4P09016 RNU5B-1-201ENST00000363286 116 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 RNA5SP171-201ENST00000391071 115 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AL603865.2-201ENST00000401679 213 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 ZNF602P-201ENST00000405929 924 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 RNA5SP36-201ENST00000410197 133 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 RN7SKP33-201ENST00000410942 340 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 RHEBP3-201ENST00000411920 351 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 NRBF2P2-201ENST00000413087 861 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 MFSD13B-201ENST00000420133 1290 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC092647.1-201ENST00000420654 287 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 FO393419.3-201ENST00000428741 282 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 COX6B1P7-201ENST00000430845 235 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 CDY14P-201ENST00000431260 1014 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD4P09016 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 AF228730.2-201ENST00000438784 848 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 CBX1P4-201ENST00000439415 457 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 CDY12P-201ENST00000440679 1015 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 MTCO1P53-201ENST00000441633 699 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 RPL21P89-201ENST00000444021 467 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC097499.1-201ENST00000444277 208 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 CDY13P-201ENST00000445813 1015 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 CDY23P-201ENST00000451661 1014 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 IFNWP4-201ENST00000453148 294 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD4P09016 RNA5SP246-201ENST00000458909 119 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 RPS3AP6-201ENST00000484430 795 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC068305.1-201ENST00000497406 726 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD4P09016 USP9YP5-201ENST00000511770 630 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC108064.1-201ENST00000513791 460 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 Y_RNA.717-201ENST00000517106 92 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms