Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AP000907.1-201ENST00000428428 510 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 TVP23BP2-201ENST00000455082 615 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 HMGN2P7-201ENST00000456186 273 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 CEACAMP4-201ENST00000457676 421 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 RPL23AP67-201ENST00000465341 474 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 HMGB1P21-201ENST00000502313 581 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AC113398.2-201ENST00000507630 558 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AC092593.2-201ENST00000513866 913 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 MTND4LP31-201ENST00000514859 294 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 MED28P5-201ENST00000528254 438 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 RMST_8.1-201ENST00000610287 165 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 MIR7851-201ENST00000610611 160 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS29Q9UBQ0 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
VPS29Q9UBQ0 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
VPS29Q9UBQ0 AC058791.1-201ENST00000608412 3198 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC136624.1-201ENST00000400791 413 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 RNU6-55P-201ENST00000411092 107 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 RNU6-954P-201ENST00000411355 107 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 PRELID3BP11-201ENST00000414230 479 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC009237.5-201ENST00000414271 501 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC007064.3-201ENST00000422608 359 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 MRPS31P2-201ENST00000451581 518 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 RNU7-27P-201ENST00000459281 62 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC004801.2-202ENST00000463559 283 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AP001086.1-201ENST00000494882 321 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 OR5H4P-201ENST00000510851 923 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL365503.1-201ENST00000605247 905 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL357559.1-201ENST00000622228 274 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC138649.5-201ENST00000637456 137 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AC119674.1-212ENST00000641155 993 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 AL513302.2-201ENST00000562313 1842 ntBASIC3.33□□□□□ -1.88
VPS29Q9UBQ0 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 MIR30E-201ENST00000362104 92 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 SNORD65-201ENST00000391079 73 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 MIR1193-201ENST00000408109 78 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 AC017079.2-201ENST00000416102 485 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 CYCSP4-201ENST00000429682 331 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 U3.44-201ENST00000458938 192 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 RPL23AP62-201ENST00000463396 453 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 CYCSP20-201ENST00000473154 315 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 TRAV31-201ENST00000502780 342 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 AL133370.2-201ENST00000619934 439 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 DCAF13P1-201ENST00000495256 1330 ntBASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS29Q9UBQ0 SYT14P1-202ENST00000600441 1448 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms