Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 MIR4429-201ENST00000580105 73 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AL353726.1-201ENST00000614041 1000 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC009318.3-201ENST00000616916 503 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AP003072.4-201ENST00000624580 310 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC018529.3-201ENST00000624212 2254 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC017104.4-201ENST00000636283 1592 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RNU11-4P-201ENST00000391149 133 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 TAF13P2-201ENST00000416876 286 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RBMY1KP-201ENST00000423480 476 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 OSTCP5-201ENST00000425293 453 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC114973.1-201ENST00000429057 632 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 GTF2IP3-201ENST00000433887 494 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 IFNWP4-201ENST00000453148 294 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC005008.1-201ENST00000456151 612 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC079804.1-201ENST00000461922 436 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RN7SL542P-201ENST00000467147 294 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RPS29P19-201ENST00000479709 171 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RN7SL817P-201ENST00000480777 288 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 VN1R105P-201ENST00000486595 910 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AF213884.1-201ENST00000488102 463 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RPL21P131-201ENST00000497298 483 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 SNORA19.3-201ENST00000516165 130 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RNU6-416P-201ENST00000516265 103 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 RNU1-45P-201ENST00000517191 141 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 SMARCE1P4-201ENST00000523647 241 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC053481.4-201ENST00000583164 216 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC002487.1-201ENST00000604565 994 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 SGO1P1-201ENST00000603525 1447 ntBASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC3Q9BQI4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CCDC3Q9BQI4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.09□□□□□ -1.76
CCDC3Q9BQI4 AC007390.2-201ENST00000606229 3803 ntBASIC4.09□□□□□ -1.76
CCDC3Q9BQI4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CCDC3Q9BQI4 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 IL6STP1-201ENST00000346911 1020 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 SNORA62.3-201ENST00000365110 153 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 MIR16-1-201ENST00000385271 89 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 MCTS2P-201ENST00000394552 546 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 HSPD1P16-201ENST00000402302 394 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 MTCO2P31-201ENST00000402702 684 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 MIR1179-201ENST00000408703 91 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 CYCSP19-201ENST00000411715 316 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 MTATP6P20-201ENST00000414147 562 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AL389915.1-201ENST00000422463 466 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 PDSS1P1-201ENST00000422953 1114 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 MTCO2P23-201ENST00000425216 680 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AL356276.2-201ENST00000435919 558 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 HMGB1P45-201ENST00000435986 653 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms