Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AP000919.1-202ENST00000581139 1264 ntBASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 MIR6075-201ENST00000620782 95 ntBASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 AP003072.5-201ENST00000623872 773 ntBASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 AC007656.2-201ENST00000624902 4547 ntBASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC112Q8NEF3 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 MIR23A-201ENST00000385245 73 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 RANP4-201ENST00000413361 655 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 LINC01881-201ENST00000416103 412 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 BX890604.2-201ENST00000427883 474 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC073069.1-201ENST00000428657 441 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC018644.1-201ENST00000429934 551 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 RPL23AP22-201ENST00000437556 453 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AL645931.1-201ENST00000439737 410 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 HMGN1P18-201ENST00000457642 277 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC091564.1-201ENST00000464563 479 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC034236.1-201ENST00000469891 373 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 RN7SL594P-201ENST00000470590 287 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 MTND6P6-201ENST00000478031 263 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 GAPDHP36-201ENST00000480688 918 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 RPS4XP15-201ENST00000489210 795 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AL133372.1-201ENST00000493565 745 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC111000.5-201ENST00000506559 1178 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 SNORA64.4-201ENST00000516632 81 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 RNA5SP309-201ENST00000516670 106 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC068657.1-201ENST00000520807 306 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC006077.1-201ENST00000604746 343 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC034236.3-201ENST00000605999 461 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 AC011816.2-201ENST00000607089 556 ntBASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC112Q8NEF3 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.9□□□□□ -1.78
CCDC112Q8NEF3 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
CCDC112Q8NEF3 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
CCDC112Q8NEF3 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.78
CCDC112Q8NEF3 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 RNU6-233P-201ENST00000410845 141 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 MTND4P22-201ENST00000413116 1169 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 PTP4A1P5-201ENST00000420305 455 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AL513174.1-201ENST00000423182 629 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AL035246.1-201ENST00000433554 1255 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 FTH1P1-201ENST00000437933 532 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 CACYBPP1-201ENST00000438592 684 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AC114982.2-201ENST00000461396 358 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 SETP14-201ENST00000497538 873 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 MIR2276-201ENST00000516886 89 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 PAICSP4-201ENST00000517543 1253 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AC107982.3-201ENST00000584957 985 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AC083899.3-201ENST00000603413 594 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AC112230.1-201ENST00000604342 547 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AL136964.1-201ENST00000622038 2990 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 AC090229.1-201ENST00000590983 1609 ntBASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
CCDC112Q8NEF3 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 AC007496.3-201ENST00000624987 3443 ntBASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 RNA5SP383-201ENST00000362934 120 ntBASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 RNU6-225P-201ENST00000384613 103 ntBASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 MT-TP-201ENST00000387461 68 ntBASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 AL133547.1-201ENST00000448546 220 ntBASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC112Q8NEF3 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms