Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 TRBV26-201ENST00000456572 344 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC011476.1-201ENST00000466725 307 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC023194.1-201ENST00000493084 308 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC079382.1-201ENST00000493346 557 ntBASIC5.94□□□□□ -1.46
LIG3P49916 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 AC018797.3-201ENST00000513388 1241 ntBASIC5.94□□□□□ -1.46
LIG3P49916 MTCO1P35-201ENST00000515270 228 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC078899.1-201ENST00000521432 1185 ntBASIC5.94□□□□□ -1.46
LIG3P49916 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.94□□□□□ -1.46
LIG3P49916 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.94□□□□□ -1.46
LIG3P49916 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC5.94□□□□□ -1.46
LIG3P49916 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC068722.2-201ENST00000618734 544 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AL136221.1-201ENST00000621449 509 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC024560.2-201ENST00000507981 1497 ntBASIC5.94□□□□□ -1.46
LIG3P49916 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.93□□□□□ -1.46
LIG3P49916 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
LIG3P49916 ERCC6-202ENST00000374127 1782 ntBASIC5.93□□□□□ -1.46
LIG3P49916 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.93□□□□□ -1.46
LIG3P49916 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 AC130304.1-201ENST00000622942 2385 ntBASIC5.93□□□□□ -1.46
LIG3P49916 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.93□□□□□ -1.46
LIG3P49916 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 OR52B3P-201ENST00000314715 928 ntBASIC5.93□□□□□ -1.46
LIG3P49916 RNU6-744P-201ENST00000365557 107 ntBASIC5.93□□□□□ -1.46
LIG3P49916 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
LIG3P49916 RNU6-1316P-201ENST00000384242 108 ntBASIC5.93□□□□□ -1.46
LIG3P49916 RNA5SP122-201ENST00000384457 108 ntBASIC5.93□□□□□ -1.46
LIG3P49916 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
LIG3P49916 AC127391.1-201ENST00000411737 98 ntBASIC5.93□□□□□ -1.46
LIG3P49916 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.93□□□□□ -1.46
LIG3P49916 NUP35P2-201ENST00000416748 943 ntBASIC5.93□□□□□ -1.46
LIG3P49916 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 CEACAMP9-201ENST00000442990 513 ntBASIC5.93□□□□□ -1.46
LIG3P49916 FAM103A2P-201ENST00000444122 354 ntBASIC5.93□□□□□ -1.46
LIG3P49916 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.93□□□□□ -1.46
LIG3P49916 AP006222.1-205ENST00000450734 457 ntBASIC5.93□□□□□ -1.46
LIG3P49916 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC5.93□□□□□ -1.46
LIG3P49916 RN7SL57P-201ENST00000493687 290 ntBASIC5.93□□□□□ -1.46
LIG3P49916 HMGN1P12-201ENST00000499125 195 ntBASIC5.93□□□□□ -1.46
LIG3P49916 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.93□□□□□ -1.46
LIG3P49916 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC5.93□□□□□ -1.46
LIG3P49916 RN7SKP288-201ENST00000516227 268 ntBASIC5.93□□□□□ -1.46
LIG3P49916 Vault.3-201ENST00000516676 95 ntBASIC5.93□□□□□ -1.46
LIG3P49916 RNU6-445P-201ENST00000516949 107 ntBASIC5.93□□□□□ -1.46
LIG3P49916 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.93□□□□□ -1.46
LIG3P49916 AP000648.1-201ENST00000529682 397 ntBASIC5.93□□□□□ -1.46
LIG3P49916 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.93□□□□□ -1.46
LIG3P49916 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.93□□□□□ -1.46
LIG3P49916 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.93□□□□□ -1.46
LIG3P49916 AL162413.1-201ENST00000603198 110 ntBASIC5.93□□□□□ -1.46
LIG3P49916 AC010680.3-201ENST00000604215 520 ntBASIC5.93□□□□□ -1.46
LIG3P49916 AC023813.4-201ENST00000607580 580 ntBASIC5.93□□□□□ -1.46
LIG3P49916 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.93□□□□□ -1.46
LIG3P49916 AL133173.2-201ENST00000614270 90 ntBASIC5.93□□□□□ -1.46
LIG3P49916 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
LIG3P49916 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LIG3P49916 AL049780.3-201ENST00000624612 1583 ntBASIC5.93□□□□□ -1.46
LIG3P49916 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
LIG3P49916 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.92□□□□□ -1.46
LIG3P49916 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
LIG3P49916 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LIG3P49916 HSPA8P18-201ENST00000439846 1928 ntBASIC5.92□□□□□ -1.46
LIG3P49916 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
LIG3P49916 AC007938.2-201ENST00000604666 2634 ntBASIC5.92□□□□□ -1.46
LIG3P49916 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
LIG3P49916 SNORD56.2-201ENST00000363242 71 ntBASIC5.92□□□□□ -1.46
LIG3P49916 RNA5SP211-201ENST00000365516 117 ntBASIC5.92□□□□□ -1.46
LIG3P49916 AC016769.3-201ENST00000396562 315 ntBASIC5.92□□□□□ -1.46
LIG3P49916 JKAMPP1-201ENST00000413804 919 ntBASIC5.92□□□□□ -1.46
LIG3P49916 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.92□□□□□ -1.46
LIG3P49916 RPS4XP5-201ENST00000419038 768 ntBASIC5.92□□□□□ -1.46
LIG3P49916 AC009965.2-201ENST00000425328 970 ntBASIC5.92□□□□□ -1.46
LIG3P49916 AL513185.2-201ENST00000425543 193 ntBASIC5.92□□□□□ -1.46
LIG3P49916 AL353777.1-201ENST00000425552 326 ntBASIC5.92□□□□□ -1.46
LIG3P49916 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.92□□□□□ -1.46
LIG3P49916 RPL36P19-201ENST00000430744 301 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms