Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL049844.2-201ENST00000604280 628 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC244517.3-201ENST00000616254 1235 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC074276.2-201ENST00000619891 348 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AL669942.2-201ENST00000620352 697 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC018692.3-201ENST00000623929 123 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
BRCA1P38398 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.12□□□□□ -1.75
BRCA1P38398 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
BRCA1P38398 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.12□□□□□ -1.75
BRCA1P38398 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
BRCA1P38398 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
BRCA1P38398 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.12□□□□□ -1.75
BRCA1P38398 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
BRCA1P38398 RNA5SP105-201ENST00000391123 113 ntBASIC4.12□□□□□ -1.75
BRCA1P38398 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.12□□□□□ -1.75
BRCA1P38398 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.12□□□□□ -1.75
BRCA1P38398 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
BRCA1P38398 AC002553.2-201ENST00000453217 340 ntBASIC4.12□□□□□ -1.75
BRCA1P38398 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.12□□□□□ -1.75
BRCA1P38398 SEPT14P1-201ENST00000458703 648 ntBASIC4.12□□□□□ -1.75
BRCA1P38398 AC113398.2-201ENST00000507630 558 ntBASIC4.12□□□□□ -1.75
BRCA1P38398 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.12□□□□□ -1.75
BRCA1P38398 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.12□□□□□ -1.75
BRCA1P38398 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.12□□□□□ -1.75
BRCA1P38398 AC015813.4-201ENST00000610469 179 ntBASIC4.12□□□□□ -1.75
BRCA1P38398 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.12□□□□□ -1.75
BRCA1P38398 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.12□□□□□ -1.75
BRCA1P38398 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
BRCA1P38398 AC005332.5-201ENST00000591222 2919 ntBASIC4.12□□□□□ -1.75
BRCA1P38398 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
BRCA1P38398 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.12□□□□□ -1.75
BRCA1P38398 SNORD74.4-201ENST00000364129 80 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 ARF4P3-201ENST00000397387 509 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC098592.2-201ENST00000413158 265 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 MOB1AP1-201ENST00000430903 535 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC096638.2-201ENST00000434965 711 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 ATP5C1P1-201ENST00000441945 895 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 MTND4LP12-201ENST00000448237 295 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC239809.1-201ENST00000450470 217 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.11□□□□□ -1.75
BRCA1P38398 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.11□□□□□ -1.75
BRCA1P38398 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.11□□□□□ -1.75
BRCA1P38398 SNORD116-30-201ENST00000516468 85 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.11□□□□□ -1.75
BRCA1P38398 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.11□□□□□ -1.75
BRCA1P38398 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.11□□□□□ -1.75
BRCA1P38398 KC877982.1-201ENST00000602313 470 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC012603.1-201ENST00000606424 528 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.11□□□□□ -1.75
BRCA1P38398 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
BRCA1P38398 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.11□□□□□ -1.75
BRCA1P38398 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
BRCA1P38398 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BRCA1P38398 SAGE4P-201ENST00000442271 3381 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BRCA1P38398 MIR422A-201ENST00000362286 90 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 RNU6-697P-201ENST00000363348 107 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 SNORA7.4-201ENST00000384249 137 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 EEF1A1P41-201ENST00000414667 207 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 RN7SL594P-201ENST00000470590 287 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC010374.2-201ENST00000512933 535 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 APOOP4-201ENST00000513530 597 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 RN7SKP34-201ENST00000516142 244 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.11□□□□□ -1.75
BRCA1P38398 AC022882.1-201ENST00000532142 501 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC087888.1-201ENST00000550884 1254 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AL390334.1-201ENST00000556395 450 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.11□□□□□ -1.75
BRCA1P38398 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.11□□□□□ -1.75
BRCA1P38398 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.11□□□□□ -1.75
BRCA1P38398 AC006557.5-201ENST00000603126 811 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AC233280.2-201ENST00000603917 1070 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 AL135786.2-201ENST00000608422 615 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 OTUD4P1-201ENST00000237841 3067 ntBASIC4.11□□□□□ -1.75
BRCA1P38398 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
BRCA1P38398 AC092435.4-201ENST00000623012 4159 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.1□□□□□ -1.75
BRCA1P38398 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
BRCA1P38398 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
BRCA1P38398 OR5H2-201ENST00000355273 945 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
BRCA1P38398 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.1□□□□□ -1.75
BRCA1P38398 NUP35P1-201ENST00000422734 947 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.1□□□□□ -1.75
BRCA1P38398 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.1□□□□□ -1.75
BRCA1P38398 RPL7P59-201ENST00000447700 943 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.1□□□□□ -1.75
BRCA1P38398 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.1□□□□□ -1.75
BRCA1P38398 EIF4EP5-201ENST00000528228 640 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.1□□□□□ -1.75
BRCA1P38398 AC010615.3-201ENST00000597319 394 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 AC020914.4-201ENST00000597690 277 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 AL354950.1-201ENST00000614150 568 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 AL122125.1-201ENST00000616999 600 ntBASIC4.1□□□□□ -1.75
BRCA1P38398 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
BRCA1P38398 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
BRCA1P38398 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
BRCA1P38398 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.1□□□□□ -1.75
BRCA1P38398 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
BRCA1P38398 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms