Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNA5SP44-201ENST00000410446 133 ntBASIC3.94□□□□□ -1.78
SDC3O75056 RAB9AP3-201ENST00000412737 573 ntBASIC3.94□□□□□ -1.78
SDC3O75056 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 AC073335.1-201ENST00000427776 363 ntBASIC3.94□□□□□ -1.78
SDC3O75056 ELOCP6-201ENST00000429066 328 ntBASIC3.94□□□□□ -1.78
SDC3O75056 YWHAEP5-201ENST00000431545 765 ntBASIC3.94□□□□□ -1.78
SDC3O75056 RPS6P12-201ENST00000432491 726 ntBASIC3.94□□□□□ -1.78
SDC3O75056 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.94□□□□□ -1.78
SDC3O75056 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.94□□□□□ -1.78
SDC3O75056 RAB9AP1-201ENST00000449393 573 ntBASIC3.94□□□□□ -1.78
SDC3O75056 RPL36AP13-201ENST00000457490 317 ntBASIC3.94□□□□□ -1.78
SDC3O75056 ELOCP12-201ENST00000458706 328 ntBASIC3.94□□□□□ -1.78
SDC3O75056 CYCSP20-201ENST00000473154 315 ntBASIC3.94□□□□□ -1.78
SDC3O75056 RPL21P47-201ENST00000483696 477 ntBASIC3.94□□□□□ -1.78
SDC3O75056 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.94□□□□□ -1.78
SDC3O75056 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 RN7SL323P-201ENST00000494712 295 ntBASIC3.94□□□□□ -1.78
SDC3O75056 MTCO2P9-201ENST00000503214 694 ntBASIC3.94□□□□□ -1.78
SDC3O75056 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.94□□□□□ -1.78
SDC3O75056 AC090071.1-201ENST00000507713 644 ntBASIC3.94□□□□□ -1.78
SDC3O75056 RPL7L1P13-201ENST00000511702 739 ntBASIC3.94□□□□□ -1.78
SDC3O75056 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.94□□□□□ -1.78
SDC3O75056 C1DP5-201ENST00000525775 383 ntBASIC3.94□□□□□ -1.78
SDC3O75056 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.94□□□□□ -1.78
SDC3O75056 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.94□□□□□ -1.78
SDC3O75056 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 AC008739.3-201ENST00000603262 127 ntBASIC3.94□□□□□ -1.78
SDC3O75056 AP003117.2-201ENST00000606010 545 ntBASIC3.94□□□□□ -1.78
SDC3O75056 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 AC119744.1-201ENST00000454746 1715 ntBASIC3.94□□□□□ -1.78
SDC3O75056 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 AL133412.1-201ENST00000380194 2992 ntBASIC3.93□□□□□ -1.78
SDC3O75056 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 SNORA73.2-201ENST00000364946 201 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.93□□□□□ -1.78
SDC3O75056 SNORA57.3-201ENST00000411095 141 ntBASIC3.93□□□□□ -1.78
SDC3O75056 PRELID3BP11-201ENST00000414230 479 ntBASIC3.93□□□□□ -1.78
SDC3O75056 UBTFL3-201ENST00000418934 1024 ntBASIC3.93□□□□□ -1.78
SDC3O75056 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 AL391219.1-201ENST00000422570 483 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.93□□□□□ -1.78
SDC3O75056 RPS26P40-201ENST00000435209 294 ntBASIC3.93□□□□□ -1.78
SDC3O75056 RPL23AP89-201ENST00000439324 255 ntBASIC3.93□□□□□ -1.78
SDC3O75056 NOTCH2P1-201ENST00000443481 624 ntBASIC3.93□□□□□ -1.78
SDC3O75056 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.93□□□□□ -1.78
SDC3O75056 MOB1AP2-201ENST00000446060 614 ntBASIC3.93□□□□□ -1.78
SDC3O75056 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 UBTFL6-201ENST00000477929 1024 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AC139783.2-201ENST00000504847 1145 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AC121161.1-201ENST00000510606 652 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AC005351.1-201ENST00000511152 786 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AC093853.1-201ENST00000515689 483 ntBASIC3.93□□□□□ -1.78
SDC3O75056 RNU7-143P-201ENST00000516781 65 ntBASIC3.93□□□□□ -1.78
SDC3O75056 RNA5SP179-201ENST00000517284 121 ntBASIC3.93□□□□□ -1.78
SDC3O75056 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 AC113192.3-201ENST00000529152 742 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.93□□□□□ -1.78
SDC3O75056 AC139103.1-201ENST00000534696 1030 ntBASIC3.93□□□□□ -1.78
SDC3O75056 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 AC135001.1-201ENST00000544546 283 ntBASIC3.93□□□□□ -1.78
SDC3O75056 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.93□□□□□ -1.78
SDC3O75056 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.93□□□□□ -1.78
SDC3O75056 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 AC093510.2-201ENST00000562820 896 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 AC012417.1-201ENST00000582307 1039 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AC091167.4-201ENST00000605079 184 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 FRG1HP-204ENST00000617940 757 ntBASIC3.93□□□□□ -1.78
SDC3O75056 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 AC103858.2-201ENST00000621471 543 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC3O75056 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
SDC3O75056 AP000720.1-201ENST00000625091 483 ntBASIC3.93□□□□□ -1.78
SDC3O75056 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.93□□□□□ -1.78
SDC3O75056 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.93□□□□□ -1.78
SDC3O75056 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.93□□□□□ -1.78
SDC3O75056 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC3O75056 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
SDC3O75056 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 MIR16-2-201ENST00000362117 81 ntBASIC3.92□□□□□ -1.78
SDC3O75056 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 RPS23P10-201ENST00000416185 486 ntBASIC3.92□□□□□ -1.78
SDC3O75056 CYP4F29P-201ENST00000420685 446 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC093422.3-201ENST00000428506 305 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms