Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
Vps28Q9D1C8 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.9■□□□□ 0.3
Vps28Q9D1C8 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC16.9■□□□□ 0.3
Vps28Q9D1C8 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Vps28Q9D1C8 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Vps28Q9D1C8 Gm45203-201ENSMUST00000206384 1831 ntBASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Gm44450-201ENSMUST00000199528 114 ntBASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vps28Q9D1C8 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Gm27704-201ENSMUST00000185094 107 ntBASIC16.88■□□□□ 0.29
Vps28Q9D1C8 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vps28Q9D1C8 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Vps28Q9D1C8 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms