Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Gm28033-201ENSMUST00000184224 96 ntBASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Gm7213-201ENSMUST00000215977 950 ntBASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps53Q8CCB4 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Gm13216-201ENSMUST00000117145 591 ntBASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps53Q8CCB4 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Gm11355-201ENSMUST00000121120 306 ntBASIC19.16■□□□□ 0.66
Vps53Q8CCB4 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Gm17808-201ENSMUST00000200859 894 ntBASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Gm9731-201ENSMUST00000209480 747 ntBASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Il3ra-202ENSMUST00000223589 738 ntBASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps53Q8CCB4 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.15■□□□□ 0.66
Vps53Q8CCB4 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Vps53Q8CCB4 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Vps53Q8CCB4 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
Vps53Q8CCB4 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Haglr-201ENSMUST00000100000 2085 ntBASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Gm18669-201ENSMUST00000216049 778 ntBASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms