Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 Gm27357-201ENSMUST00000183754 135 ntBASIC19.45■□□□□ 0.7
Trim56Q80VI1 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.45■□□□□ 0.7
Trim56Q80VI1 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Trim56Q80VI1 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim56Q80VI1 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.44■□□□□ 0.7
Trim56Q80VI1 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Gm10052-201ENSMUST00000168019 960 ntBASIC19.44■□□□□ 0.7
Trim56Q80VI1 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Gm44430-201ENSMUST00000203376 995 ntBASIC19.44■□□□□ 0.7
Trim56Q80VI1 Gm7729-201ENSMUST00000050143 801 ntBASIC19.44■□□□□ 0.7
Trim56Q80VI1 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.44■□□□□ 0.7
Trim56Q80VI1 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.44■□□□□ 0.7
Trim56Q80VI1 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Gm17807-201ENSMUST00000186869 298 ntBASIC19.43■□□□□ 0.7
Trim56Q80VI1 Gm36967-201ENSMUST00000193814 266 ntBASIC19.43■□□□□ 0.7
Trim56Q80VI1 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.43■□□□□ 0.7
Trim56Q80VI1 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim56Q80VI1 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Mir3081-201ENSMUST00000175305 84 ntBASIC19.42■□□□□ 0.7
Trim56Q80VI1 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Trim56Q80VI1 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC19.42■□□□□ 0.7
Trim56Q80VI1 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim56Q80VI1 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.41■□□□□ 0.7
Trim56Q80VI1 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms