Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHD9Q3L8U1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 TSSC2-201ENST00000450217 709 ntBASIC20.52■□□□□ 0.88
CHD9Q3L8U1 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 CHCHD2P8-201ENST00000429873 447 ntBASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AP002414.4-201ENST00000589764 1148 ntBASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AL121672.3-201ENST00000608644 468 ntBASIC20.52■□□□□ 0.88
CHD9Q3L8U1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHD9Q3L8U1 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CHD9Q3L8U1 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
CHD9Q3L8U1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
CHD9Q3L8U1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CHD9Q3L8U1 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
CHD9Q3L8U1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.52■□□□□ 0.87
CHD9Q3L8U1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CHD9Q3L8U1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 AC120114.3-201ENST00000611923 658 ntBASIC20.51■□□□□ 0.87
CHD9Q3L8U1 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.51■□□□□ 0.87
CHD9Q3L8U1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 AC093525.10-201ENST00000625130 1569 ntBASIC20.5■□□□□ 0.87
CHD9Q3L8U1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 AC034232.1-201ENST00000506026 1064 ntBASIC20.5■□□□□ 0.87
CHD9Q3L8U1 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 BX640515.1-201ENST00000617215 977 ntBASIC20.5■□□□□ 0.87
CHD9Q3L8U1 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHD9Q3L8U1 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 AC036111.1-201ENST00000533973 1582 ntBASIC20.49■□□□□ 0.87
CHD9Q3L8U1 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 KRT16P6-202ENST00000425692 1426 ntBASIC20.49■□□□□ 0.87
CHD9Q3L8U1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.49■□□□□ 0.87
CHD9Q3L8U1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 NUS1P1-201ENST00000446295 882 ntBASIC20.48■□□□□ 0.87
CHD9Q3L8U1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms