Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CYP2C60P-201ENST00000566088 139 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RPL23AP97-201ENST00000568955 471 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RPAP2P1-201ENST00000603626 1168 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 Z82195.1-201ENST00000604558 398 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC009948.4-201ENST00000604692 675 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC245389.1-201ENST00000605141 529 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC112220.2-201ENST00000605513 533 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC027449.1-201ENST00000608890 407 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 DUXAP10-204ENST00000612052 616 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 MIR6875-201ENST00000617506 72 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 VN1R7P-201ENST00000619242 903 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC007546.1-201ENST00000619452 559 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AL356863.1-201ENST00000623378 1080 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC010608.2-201ENST00000624830 470 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC022893.2-201ENST00000564832 3296 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RLIMP1-201ENST00000339626 1680 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 RNU1-20P-201ENST00000363314 162 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 MIR554-201ENST00000384874 96 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 RNA5SP372-201ENST00000390836 115 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AL603865.2-201ENST00000401679 213 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC114814.2-201ENST00000419195 485 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 RPL7P4-203ENST00000430239 730 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 RPEP2-201ENST00000432149 701 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 MRPL35P4-201ENST00000453682 566 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC091959.2-201ENST00000477363 321 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 OR7E13P-201ENST00000526052 910 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 DEFB130C-202ENST00000530001 230 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 AL353600.1-201ENST00000608148 251 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 VN1R74P-201ENST00000613259 503 ntBASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC3Q9BQI4 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 RNU1-87P-201ENST00000363727 170 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 RNU4-51P-201ENST00000364206 140 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 MIR708-201ENST00000390708 88 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 ENSAP1-201ENST00000392855 326 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AL161631.1-201ENST00000417933 486 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC004448.2-201ENST00000422360 586 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC073335.1-201ENST00000427776 363 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 RPL23AP46-201ENST00000438548 490 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 MTCYBP42-201ENST00000444653 1130 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AL162388.1-201ENST00000450912 352 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC006511.1-201ENST00000470614 315 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC008885.2-201ENST00000509506 930 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AC110760.3-202ENST00000515177 371 ntBASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC3Q9BQI4 LRRC6P1-201ENST00000532188 885 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms