Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 RNU6-885P-201ENST00000516607 104 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 MYL12AP1-201ENST00000518490 515 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 MTND4P33-201ENST00000556706 766 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 HMGB3P26-201ENST00000560051 582 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 MIR3912-201ENST00000577566 105 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AP001269.3-201ENST00000588718 329 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 BPIFA4P-203ENST00000603168 689 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC093765.1-201ENST00000603758 881 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AL121873.1-201ENST00000616013 524 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AL157770.1-201ENST00000623049 439 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AP002791.1-201ENST00000623291 381 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AP000676.4-201ENST00000624659 623 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 RNU1-108P-201ENST00000362556 161 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 RNU4-92P-201ENST00000363783 136 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 Y_RNA.408-201ENST00000383987 102 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 SNORD65.1-201ENST00000390889 71 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 GLULP6-201ENST00000399502 913 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 UBTFL3-201ENST00000418934 1024 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC062016.2-201ENST00000420950 676 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 Z93242.1-201ENST00000427102 353 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 MTCO1P3-201ENST00000429327 192 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 PRELID3BP10-201ENST00000431957 584 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 CEACAMP1-201ENST00000434624 1035 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 FGF7P5-201ENST00000441829 291 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 H2AFZP6-201ENST00000444403 394 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 CEACAMP6-201ENST00000452007 574 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC010326.1-201ENST00000462726 602 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 OR52A4P-201ENST00000472867 958 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 UBTFL6-201ENST00000477929 1024 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 FTH1P24-201ENST00000503502 462 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC021146.5-201ENST00000503544 545 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 RPL7L1P13-201ENST00000511702 739 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AP001781.1-201ENST00000530977 207 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 MTCO2P15-201ENST00000532655 656 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC023538.1-201ENST00000534576 736 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AL133338.2-201ENST00000604292 736 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AL031666.3-201ENST00000609320 1006 ntBASIC3.8□□□□□ -1.8
NKX3-1Q99801 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
NKX3-1Q99801 AC074029.4-201ENST00000624796 1859 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms